miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5560 5' -57.1 NC_001806.1 + 12241 0.66 0.876272
Target:  5'- cUCUACGCCCccauCGUAGUaggugGUgUGGGGg -3'
miRNA:   3'- cAGAUGUGGGu---GCGUCAg----CGgACCUC- -5'
5560 5' -57.1 NC_001806.1 + 67206 0.66 0.868996
Target:  5'- gGUCUGCcGgCCugGCGGggCGCgCUGGuGg -3'
miRNA:   3'- -CAGAUG-UgGGugCGUCa-GCG-GACCuC- -5'
5560 5' -57.1 NC_001806.1 + 76198 0.66 0.861508
Target:  5'- -gCUACGCCgagUACGUGGauauccgcgaUCGCCUGGAc -3'
miRNA:   3'- caGAUGUGG---GUGCGUC----------AGCGGACCUc -5'
5560 5' -57.1 NC_001806.1 + 128689 0.66 0.861508
Target:  5'- -gCUACACCCccGCGCAccUCGgCCgUGGAGu -3'
miRNA:   3'- caGAUGUGGG--UGCGUc-AGC-GG-ACCUC- -5'
5560 5' -57.1 NC_001806.1 + 72314 0.66 0.853815
Target:  5'- -aUUACACCCGCGa--UCGCCcGGAc -3'
miRNA:   3'- caGAUGUGGGUGCgucAGCGGaCCUc -5'
5560 5' -57.1 NC_001806.1 + 19558 0.66 0.837837
Target:  5'- uUUUACACaagGCGCAaaagCGCCUGGGGa -3'
miRNA:   3'- cAGAUGUGgg-UGCGUca--GCGGACCUC- -5'
5560 5' -57.1 NC_001806.1 + 92900 0.66 0.837837
Target:  5'- -gCUGCGgccgcguggUCCGCGCAGggcggggcggGCCUGGAGg -3'
miRNA:   3'- caGAUGU---------GGGUGCGUCag--------CGGACCUC- -5'
5560 5' -57.1 NC_001806.1 + 58232 0.67 0.829566
Target:  5'- --gUGCcCCCGCcgaccuGCAGUCGCC-GGAGc -3'
miRNA:   3'- cagAUGuGGGUG------CGUCAGCGGaCCUC- -5'
5560 5' -57.1 NC_001806.1 + 23585 0.67 0.812497
Target:  5'- ---gGCGCCCGCgGCcGcCGcCCUGGAGg -3'
miRNA:   3'- cagaUGUGGGUG-CGuCaGC-GGACCUC- -5'
5560 5' -57.1 NC_001806.1 + 80995 0.67 0.803714
Target:  5'- gGUCguaGCGCCCugGCGGUacugauccgCGCCUGu-- -3'
miRNA:   3'- -CAGa--UGUGGGugCGUCA---------GCGGACcuc -5'
5560 5' -57.1 NC_001806.1 + 16739 0.67 0.803714
Target:  5'- cGUCcgcgGCAUCCGCGCuggGGUCGUCcucuaUGGGGu -3'
miRNA:   3'- -CAGa---UGUGGGUGCG---UCAGCGG-----ACCUC- -5'
5560 5' -57.1 NC_001806.1 + 3454 0.67 0.794777
Target:  5'- cUCgACGgCCACGCGGcCGgCCUGGGc -3'
miRNA:   3'- cAGaUGUgGGUGCGUCaGC-GGACCUc -5'
5560 5' -57.1 NC_001806.1 + 94223 0.68 0.748081
Target:  5'- uUCU-CACCC-CGCuGUCGgucacCCUGGAGu -3'
miRNA:   3'- cAGAuGUGGGuGCGuCAGC-----GGACCUC- -5'
5560 5' -57.1 NC_001806.1 + 99964 0.69 0.708851
Target:  5'- aGUCgAC-CCCGCGCGGcgCGCCUcGAGc -3'
miRNA:   3'- -CAGaUGuGGGUGCGUCa-GCGGAcCUC- -5'
5560 5' -57.1 NC_001806.1 + 22249 0.69 0.708851
Target:  5'- cUgUACACCCcggACGCGGagGCCaUGGGGu -3'
miRNA:   3'- cAgAUGUGGG---UGCGUCagCGG-ACCUC- -5'
5560 5' -57.1 NC_001806.1 + 151063 0.7 0.658423
Target:  5'- ---cGCACCCGCGCgggGGUCGCg-GGGGu -3'
miRNA:   3'- cagaUGUGGGUGCG---UCAGCGgaCCUC- -5'
5560 5' -57.1 NC_001806.1 + 58327 0.72 0.537059
Target:  5'- cGUCUugGCgUugGCGGcCGCCUGGc- -3'
miRNA:   3'- -CAGAugUGgGugCGUCaGCGGACCuc -5'
5560 5' -57.1 NC_001806.1 + 49380 0.73 0.459486
Target:  5'- --aUGCgGCCCguagccagucgguGCGCGGUCGCCUGGAc -3'
miRNA:   3'- cagAUG-UGGG-------------UGCGUCAGCGGACCUc -5'
5560 5' -57.1 NC_001806.1 + 109880 0.74 0.442149
Target:  5'- aGUUgGCGaCCACGCGGUCGUCUGGGc -3'
miRNA:   3'- -CAGaUGUgGGUGCGUCAGCGGACCUc -5'
5560 5' -57.1 NC_001806.1 + 133320 1.08 0.002615
Target:  5'- cGUCUACACCCACGCAGUCGCCUGGAGc -3'
miRNA:   3'- -CAGAUGUGGGUGCGUCAGCGGACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.