Results 1 - 20 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5562 | 3' | -57.2 | NC_001806.1 | + | 132374 | 1.13 | 0.001528 |
Target: 5'- gGGCACCCGCAACGAGUCACGGCACGGg -3' miRNA: 3'- -CCGUGGGCGUUGCUCAGUGCCGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 139804 | 0.86 | 0.10026 |
Target: 5'- cGGCACCCGC-GCGA-UCAUGGUACGGg -3' miRNA: 3'- -CCGUGGGCGuUGCUcAGUGCCGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 12440 | 0.79 | 0.239104 |
Target: 5'- aGGC-CCUGCAACGGGcggCACGGCAuccCGGa -3' miRNA: 3'- -CCGuGGGCGUUGCUCa--GUGCCGU---GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 147717 | 0.79 | 0.250619 |
Target: 5'- cGGCGCUCGCAcgcACGGGgcCACGGCcgcGCGGg -3' miRNA: 3'- -CCGUGGGCGU---UGCUCa-GUGCCG---UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 151063 | 0.79 | 0.256546 |
Target: 5'- cGCACCCGCGcGgGGGUCGCGGggguCGCGGg -3' miRNA: 3'- cCGUGGGCGU-UgCUCAGUGCC----GUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 55475 | 0.79 | 0.271238 |
Target: 5'- uGCACCCGCGagccguaccgggccaAUGGGUCGCGGCggucgcaccacACGGg -3' miRNA: 3'- cCGUGGGCGU---------------UGCUCAGUGCCG-----------UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 29943 | 0.77 | 0.336766 |
Target: 5'- cGGCuCCCGCcagucGCGAGcCGCGGCgccGCGGg -3' miRNA: 3'- -CCGuGGGCGu----UGCUCaGUGCCG---UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 115651 | 0.76 | 0.35948 |
Target: 5'- aGUGCCCGCAACGGGgaagccCACG-CGCGGg -3' miRNA: 3'- cCGUGGGCGUUGCUCa-----GUGCcGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 136969 | 0.75 | 0.425094 |
Target: 5'- gGGgGCCCGCgAGCGuggugcGGUCAUGGCgGCGGc -3' miRNA: 3'- -CCgUGGGCG-UUGC------UCAGUGCCG-UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 76527 | 0.75 | 0.425094 |
Target: 5'- cGCGCCgaaGCcaccgAGCGGGUCACGGCGgGGc -3' miRNA: 3'- cCGUGGg--CG-----UUGCUCAGUGCCGUgCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 150971 | 0.75 | 0.433786 |
Target: 5'- cGGCccGCUCGCGggcccACGAGcCGCGGCGCGc -3' miRNA: 3'- -CCG--UGGGCGU-----UGCUCaGUGCCGUGCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 30389 | 0.75 | 0.433786 |
Target: 5'- gGGCGCgUGCGACGGuGgcgCGCGGCuCGGg -3' miRNA: 3'- -CCGUGgGCGUUGCU-Ca--GUGCCGuGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 3099 | 0.74 | 0.441697 |
Target: 5'- cGGCGgCCGCGgagcucggcaggcGCGGGUCccGCGGCagcGCGGg -3' miRNA: 3'- -CCGUgGGCGU-------------UGCUCAG--UGCCG---UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 135550 | 0.74 | 0.451476 |
Target: 5'- cGGCugCCGCAuccACcGGUCACGGacuCGGc -3' miRNA: 3'- -CCGugGGCGU---UGcUCAGUGCCgu-GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 95676 | 0.74 | 0.460468 |
Target: 5'- uGCGCCCuGaCGGCGGG-CGCGgGCACGGu -3' miRNA: 3'- cCGUGGG-C-GUUGCUCaGUGC-CGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 128567 | 0.74 | 0.469553 |
Target: 5'- gGGCGCggUCGUAGCGggaGGUCACGGCGCc- -3' miRNA: 3'- -CCGUG--GGCGUUGC---UCAGUGCCGUGcc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 52051 | 0.74 | 0.473213 |
Target: 5'- aGGCGCCCGCGgaaacguucGCGcgccaucuggaccggGGUCccaGCGGCACGa -3' miRNA: 3'- -CCGUGGGCGU---------UGC---------------UCAG---UGCCGUGCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 123122 | 0.73 | 0.506767 |
Target: 5'- cGCACaCCGgGugGCGGGUCGCGGCGgCGa -3' miRNA: 3'- cCGUG-GGCgU--UGCUCAGUGCCGU-GCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 74478 | 0.73 | 0.516269 |
Target: 5'- aGGCGCgCCGCAGCucGGGUCuggccgagcuGCGGCGCu- -3' miRNA: 3'- -CCGUG-GGCGUUG--CUCAG----------UGCCGUGcc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 78634 | 0.73 | 0.525842 |
Target: 5'- cGCAccCCCGCGGCGcgcGUUACGGcCAUGGa -3' miRNA: 3'- cCGU--GGGCGUUGCu--CAGUGCC-GUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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