Results 21 - 40 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5562 | 3' | -57.2 | NC_001806.1 | + | 140416 | 0.66 | 0.889717 |
Target: 5'- -aCACgCGCGACGGG-CAgugagggUGGCAUGGg -3' miRNA: 3'- ccGUGgGCGUUGCUCaGU-------GCCGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 64961 | 0.66 | 0.883688 |
Target: 5'- cGGCGCCCGgGccGgGGGUCcCGGgGCa- -3' miRNA: 3'- -CCGUGGGCgU--UgCUCAGuGCCgUGcc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 33416 | 0.66 | 0.883688 |
Target: 5'- -cCACCCGCGAUcGG-CACGGcCGCGc -3' miRNA: 3'- ccGUGGGCGUUGcUCaGUGCC-GUGCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 21759 | 0.66 | 0.883688 |
Target: 5'- aGGCGCgggCCGUcgGGCGGGguccgucgagCGCGGCGcCGGc -3' miRNA: 3'- -CCGUG---GGCG--UUGCUCa---------GUGCCGU-GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 48862 | 0.66 | 0.883008 |
Target: 5'- gGGCgGCCCGCGuauaaagGCGAGagCGCGGgACc- -3' miRNA: 3'- -CCG-UGGGCGU-------UGCUCa-GUGCCgUGcc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 106380 | 0.66 | 0.883008 |
Target: 5'- cGGCACCCGaCGACGgAGcuggacaUCACGcaccuGCACa- -3' miRNA: 3'- -CCGUGGGC-GUUGC-UC-------AGUGC-----CGUGcc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 1594 | 0.66 | 0.876788 |
Target: 5'- aGCGCCaCGUAcACGGGccgcaGCGGCGCGc -3' miRNA: 3'- cCGUGG-GCGU-UGCUCag---UGCCGUGCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 109934 | 0.66 | 0.876788 |
Target: 5'- uGGCAaucucCCCGgGcuGCGAGgcaCACGGCcgccccACGGa -3' miRNA: 3'- -CCGU-----GGGCgU--UGCUCa--GUGCCG------UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 49488 | 0.66 | 0.876788 |
Target: 5'- gGGCuauUuuGgGGCGGGUCGgCGGUucGCGGg -3' miRNA: 3'- -CCGu--GggCgUUGCUCAGU-GCCG--UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 116895 | 0.66 | 0.876087 |
Target: 5'- aGGCugCCGCuuuACGAggcgcucGUCGCcuGGCugacccacGCGGg -3' miRNA: 3'- -CCGugGGCGu--UGCU-------CAGUG--CCG--------UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 81935 | 0.66 | 0.874678 |
Target: 5'- cGGC-CCCGUAcgccucccgggaccGcCGGGUUcgGCGGCgACGGg -3' miRNA: 3'- -CCGuGGGCGU--------------U-GCUCAG--UGCCG-UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 138713 | 0.66 | 0.86968 |
Target: 5'- -aCGCCCGCAugGAGaacuaACGGCGg-- -3' miRNA: 3'- ccGUGGGCGUugCUCag---UGCCGUgcc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 33366 | 0.66 | 0.86968 |
Target: 5'- gGGgGCCCGga--GAGcCGCGGCAccCGGa -3' miRNA: 3'- -CCgUGGGCguugCUCaGUGCCGU--GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 35569 | 0.66 | 0.86968 |
Target: 5'- cGGCGCCgCGCcgAACGAcGUgCGCaGCGcCGGa -3' miRNA: 3'- -CCGUGG-GCG--UUGCU-CA-GUGcCGU-GCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 144958 | 0.66 | 0.86968 |
Target: 5'- cGGCcCCCGUGGCG-GcC-CGGCcCGGg -3' miRNA: 3'- -CCGuGGGCGUUGCuCaGuGCCGuGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 34300 | 0.66 | 0.86968 |
Target: 5'- gGGguUuaGCGGCGGGggGCGGCGCGc -3' miRNA: 3'- -CCguGggCGUUGCUCagUGCCGUGCc -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 75008 | 0.66 | 0.86968 |
Target: 5'- aGCACCCGaCucCG-GaCACGGCgACGGc -3' miRNA: 3'- cCGUGGGC-GuuGCuCaGUGCCG-UGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 84092 | 0.66 | 0.86968 |
Target: 5'- cGCugCCGCGgagGCccGUCGCGcCACGGu -3' miRNA: 3'- cCGugGGCGU---UGcuCAGUGCcGUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 92898 | 0.67 | 0.862369 |
Target: 5'- aGGCugCgGCcGCGuGGUCcgcgcaggGCGGgGCGGg -3' miRNA: 3'- -CCGugGgCGuUGC-UCAG--------UGCCgUGCC- -5' |
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5562 | 3' | -57.2 | NC_001806.1 | + | 53662 | 0.67 | 0.862369 |
Target: 5'- cGGCAgCCC-CAGCGcGUUGCGGguCGa -3' miRNA: 3'- -CCGU-GGGcGUUGCuCAGUGCCguGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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