miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5562 5' -46.1 NC_001806.1 + 133058 0.66 0.999986
Target:  5'- gCCCUGCGc-UGCGGCaGCUccuggGUGGGg -3'
miRNA:   3'- -GGGGCGCuaAUGCUGaUGAaa---CAUUC- -5'
5562 5' -46.1 NC_001806.1 + 97262 0.66 0.99998
Target:  5'- uCCCCGUu-UUACGGCUACcgg--GAGg -3'
miRNA:   3'- -GGGGCGcuAAUGCUGAUGaaacaUUC- -5'
5562 5' -46.1 NC_001806.1 + 67577 0.67 0.99995
Target:  5'- gUCCCGCGGUaucGCGugUugUggGggGGa -3'
miRNA:   3'- -GGGGCGCUAa--UGCugAugAaaCauUC- -5'
5562 5' -46.1 NC_001806.1 + 48699 0.67 0.999934
Target:  5'- aCCUGCGGUUGucgucUGAUUAUUUggugGUGGGg -3'
miRNA:   3'- gGGGCGCUAAU-----GCUGAUGAAa---CAUUC- -5'
5562 5' -46.1 NC_001806.1 + 147996 0.67 0.999912
Target:  5'- cCCCCGCGGcgccGCGGCUcGCgacUGgcGGg -3'
miRNA:   3'- -GGGGCGCUaa--UGCUGA-UGaa-ACauUC- -5'
5562 5' -46.1 NC_001806.1 + 81373 0.68 0.999806
Target:  5'- gCCCGCGAacauaGGCUGCgggGUAAa -3'
miRNA:   3'- gGGGCGCUaaug-CUGAUGaaaCAUUc -5'
5562 5' -46.1 NC_001806.1 + 124309 0.68 0.999806
Target:  5'- uCCCCGCG--UACGACauggACcucgGUAAGu -3'
miRNA:   3'- -GGGGCGCuaAUGCUGa---UGaaa-CAUUC- -5'
5562 5' -46.1 NC_001806.1 + 35365 0.68 0.999806
Target:  5'- cCCCCGCcccccUACGAUaGCUUgucugGUAGGa -3'
miRNA:   3'- -GGGGCGcua--AUGCUGaUGAAa----CAUUC- -5'
5562 5' -46.1 NC_001806.1 + 7458 0.69 0.999046
Target:  5'- cCCCCGCGAaccacgUACGGCUcGCgggucUGUAu- -3'
miRNA:   3'- -GGGGCGCUa-----AUGCUGA-UGaa---ACAUuc -5'
5562 5' -46.1 NC_001806.1 + 51701 0.7 0.99858
Target:  5'- aCCCCGUGG--GCGACUGCg------- -3'
miRNA:   3'- -GGGGCGCUaaUGCUGAUGaaacauuc -5'
5562 5' -46.1 NC_001806.1 + 45110 0.74 0.973653
Target:  5'- cCCCCGCGAguaGCGACgGCcgUGUGc- -3'
miRNA:   3'- -GGGGCGCUaa-UGCUGaUGaaACAUuc -5'
5562 5' -46.1 NC_001806.1 + 113251 0.83 0.662414
Target:  5'- aCCCCGCGuu--CGACUuCUUUGUGGGg -3'
miRNA:   3'- -GGGGCGCuaauGCUGAuGAAACAUUC- -5'
5562 5' -46.1 NC_001806.1 + 132409 1.12 0.021937
Target:  5'- gCCCCGCGAUUACGACUACUUUGUAAGc -3'
miRNA:   3'- -GGGGCGCUAAUGCUGAUGAAACAUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.