miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 3' -55 NC_001806.1 + 87396 0.65 0.94954
Target:  5'- cGGGCUGCGGccggacgCUugGGCgCCu -3'
miRNA:   3'- cCUCGACGCCcuaaa--GAugCCGaGGc -5'
5563 3' -55 NC_001806.1 + 133342 0.66 0.940673
Target:  5'- uGGAGCcagGCGGGAg---UGUGGUUCUGg -3'
miRNA:   3'- -CCUCGa--CGCCCUaaagAUGCCGAGGC- -5'
5563 3' -55 NC_001806.1 + 25636 0.66 0.940673
Target:  5'- uGGGGCUG-GGGAgggCUGgGGCUg-- -3'
miRNA:   3'- -CCUCGACgCCCUaaaGAUgCCGAggc -5'
5563 3' -55 NC_001806.1 + 21764 0.66 0.940673
Target:  5'- cGGGCcgucggGCGGGGUccgUCgagcGCGGCgCCGg -3'
miRNA:   3'- cCUCGa-----CGCCCUAa--AGa---UGCCGaGGC- -5'
5563 3' -55 NC_001806.1 + 39187 0.66 0.940673
Target:  5'- cGGGGCgGCGGccuugucuGcgUUCUugGGggCCGg -3'
miRNA:   3'- -CCUCGaCGCC--------CuaAAGAugCCgaGGC- -5'
5563 3' -55 NC_001806.1 + 151447 0.66 0.930857
Target:  5'- gGGGGCggcgGCGGGGcggccgCggGCGcGCUCCu -3'
miRNA:   3'- -CCUCGa---CGCCCUaaa---Ga-UGC-CGAGGc -5'
5563 3' -55 NC_001806.1 + 139098 0.66 0.92559
Target:  5'- cGGGGCUGCGaGAUg-CUGacCGGCUCg- -3'
miRNA:   3'- -CCUCGACGCcCUAaaGAU--GCCGAGgc -5'
5563 3' -55 NC_001806.1 + 41620 0.67 0.920082
Target:  5'- cGGGGgUGUGGGGcc-CUGCuGUUCCGu -3'
miRNA:   3'- -CCUCgACGCCCUaaaGAUGcCGAGGC- -5'
5563 3' -55 NC_001806.1 + 128566 0.67 0.920082
Target:  5'- aGGGCgcggucguaGCGGGAggUC-ACGGCgCCGa -3'
miRNA:   3'- cCUCGa--------CGCCCUaaAGaUGCCGaGGC- -5'
5563 3' -55 NC_001806.1 + 26163 0.67 0.920082
Target:  5'- gGGAGgaGCGGGGggaggaGCGGCcagacgCCGa -3'
miRNA:   3'- -CCUCgaCGCCCUaaaga-UGCCGa-----GGC- -5'
5563 3' -55 NC_001806.1 + 146829 0.67 0.914336
Target:  5'- cGGGgaGCaGGGUgcg-GCGGCUCCa -3'
miRNA:   3'- cCUCgaCGcCCUAaagaUGCCGAGGc -5'
5563 3' -55 NC_001806.1 + 70218 0.67 0.911971
Target:  5'- gGGAGCUGUacgugaucuccaGGGGUgccgucgagcagCUGCGGCcCCu -3'
miRNA:   3'- -CCUCGACG------------CCCUAaa----------GAUGCCGaGGc -5'
5563 3' -55 NC_001806.1 + 82729 0.67 0.908352
Target:  5'- cGGGGuCUGCGGGGcg---GCGGCgucgUCGg -3'
miRNA:   3'- -CCUC-GACGCCCUaaagaUGCCGa---GGC- -5'
5563 3' -55 NC_001806.1 + 2764 0.67 0.902131
Target:  5'- cGGGGCgcggGCGGGccugCgccgcgGCGGC-CCGg -3'
miRNA:   3'- -CCUCGa---CGCCCuaaaGa-----UGCCGaGGC- -5'
5563 3' -55 NC_001806.1 + 113287 0.67 0.902131
Target:  5'- uGGAGCUGcCGGGGggggacgUUCccccggcCGGC-CCGg -3'
miRNA:   3'- -CCUCGAC-GCCCUa------AAGau-----GCCGaGGC- -5'
5563 3' -55 NC_001806.1 + 33657 0.67 0.902131
Target:  5'- gGGGGUgucGCGGGccgUCUGCuGGC-CCGc -3'
miRNA:   3'- -CCUCGa--CGCCCuaaAGAUG-CCGaGGC- -5'
5563 3' -55 NC_001806.1 + 98212 0.67 0.894358
Target:  5'- gGGcAGCUGgGGGAgaacaacgagCUGCGGCUgaCGc -3'
miRNA:   3'- -CC-UCGACgCCCUaaa-------GAUGCCGAg-GC- -5'
5563 3' -55 NC_001806.1 + 24136 0.68 0.888991
Target:  5'- cGGGGCcGUGGaGUUUCUGgGGCUgCu -3'
miRNA:   3'- -CCUCGaCGCCcUAAAGAUgCCGAgGc -5'
5563 3' -55 NC_001806.1 + 151559 0.68 0.888991
Target:  5'- gGGGGCgGCGGGGgccgCgaugGCGGCggCGg -3'
miRNA:   3'- -CCUCGaCGCCCUaaa-Ga---UGCCGagGC- -5'
5563 3' -55 NC_001806.1 + 89779 0.68 0.867592
Target:  5'- cGGGGC-GUGGGAggggCUGgGGCggaCCGg -3'
miRNA:   3'- -CCUCGaCGCCCUaaa-GAUgCCGa--GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.