miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 44444 0.66 0.495849
Target:  5'- -gCAGGCCG-CG-GGCccGG-CGUCCGCg -3'
miRNA:   3'- agGUCCGGCaGCaCCG--CCgGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 50501 0.66 0.504856
Target:  5'- gCCccGCgGUCGUGGgGGCCGa--GCa -3'
miRNA:   3'- aGGucCGgCAGCACCgCCGGCgggCG- -5'
5563 5' -65.4 NC_001806.1 + 42363 0.66 0.478058
Target:  5'- gUCCuugauGGCCugcagGUCGUacGUGGCC-CCCGCg -3'
miRNA:   3'- -AGGu----CCGG-----CAGCAc-CGCCGGcGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 75649 0.66 0.499443
Target:  5'- cUUgAGGCCGccaccgcCGaccucagagagaagaUGGCGGCCcagcgcGCCCGCa -3'
miRNA:   3'- -AGgUCCGGCa------GC---------------ACCGCCGG------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 73558 0.66 0.495849
Target:  5'- gCCuGGCCGaCGUGGCcGCCcaucuGCCCc- -3'
miRNA:   3'- aGGuCCGGCaGCACCGcCGG-----CGGGcg -5'
5563 5' -65.4 NC_001806.1 + 23794 0.66 0.478058
Target:  5'- aCgGGGCCGcCG-GG-GGCCGCCUc- -3'
miRNA:   3'- aGgUCCGGCaGCaCCgCCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 27835 0.66 0.495849
Target:  5'- gCCGGGuuGgucccCGgGGacggGGCCGCcCCGCg -3'
miRNA:   3'- aGGUCCggCa----GCaCCg---CCGGCG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 57581 0.66 0.476296
Target:  5'- cCCGGGauggugcgagaGUUG-GGCGGCCGCCaagGCc -3'
miRNA:   3'- aGGUCCgg---------CAGCaCCGCCGGCGGg--CG- -5'
5563 5' -65.4 NC_001806.1 + 27016 0.66 0.495849
Target:  5'- uUCCGGcGCCGg-GUGGCGGagGCCgagGCg -3'
miRNA:   3'- -AGGUC-CGGCagCACCGCCggCGGg--CG- -5'
5563 5' -65.4 NC_001806.1 + 136534 0.66 0.495849
Target:  5'- -aCGGGCCGcUCG----GGCCGCCCGg -3'
miRNA:   3'- agGUCCGGC-AGCaccgCCGGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 53257 0.66 0.495849
Target:  5'- cCCGGGCCGcacCG-GGCccccGCC-CCCGCc -3'
miRNA:   3'- aGGUCCGGCa--GCaCCGc---CGGcGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 101852 0.66 0.495849
Target:  5'- aCCAGcGCCGcC-UGGCgGGCC-CCCGa -3'
miRNA:   3'- aGGUC-CGGCaGcACCG-CCGGcGGGCg -5'
5563 5' -65.4 NC_001806.1 + 83164 0.66 0.495849
Target:  5'- cUCCugacGGCCaGUcaCGUgauaGGUGuGCCGCCCGUc -3'
miRNA:   3'- -AGGu---CCGG-CA--GCA----CCGC-CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 151448 0.66 0.502147
Target:  5'- --gGGGCgG-CGgcggGGCGGCCGCgggcgcgcuccugaCCGCg -3'
miRNA:   3'- aggUCCGgCaGCa---CCGCCGGCG--------------GGCG- -5'
5563 5' -65.4 NC_001806.1 + 90884 0.66 0.495849
Target:  5'- aCguGGaCGcCGUGGCccgcgcGGCCGCCCa- -3'
miRNA:   3'- aGguCCgGCaGCACCG------CCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 67522 0.66 0.478058
Target:  5'- cCUGGGCCGUCGcGGCgagagaucgggGGgCGCaggaCGCg -3'
miRNA:   3'- aGGUCCGGCAGCaCCG-----------CCgGCGg---GCG- -5'
5563 5' -65.4 NC_001806.1 + 134226 0.66 0.532282
Target:  5'- -aUAGGCCacgcaGUCGgagcgggggGGCGGCC-CCgGCa -3'
miRNA:   3'- agGUCCGG-----CAGCa--------CCGCCGGcGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 43115 0.66 0.486915
Target:  5'- cUCCAcGGgaGUCc---CGGCCGCCCGCc -3'
miRNA:   3'- -AGGU-CCggCAGcaccGCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 111521 0.66 0.476296
Target:  5'- aCCuuGGGCCGUCGggcacguacacgGGUGGCCGggCGUu -3'
miRNA:   3'- aGG--UCCGGCAGCa-----------CCGCCGGCggGCG- -5'
5563 5' -65.4 NC_001806.1 + 22322 0.66 0.478058
Target:  5'- aCCAGGCCuGcuuccggaucUCG-GGC-GCCGCgCGCa -3'
miRNA:   3'- aGGUCCGG-C----------AGCaCCGcCGGCGgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.