Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5563 | 5' | -65.4 | NC_001806.1 | + | 1462 | 0.72 | 0.210244 |
Target: 5'- cCCGGGCCGUCGUcGUcGCCGCgCaGCa -3' miRNA: 3'- aGGUCCGGCAGCAcCGcCGGCGgG-CG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 1559 | 0.69 | 0.348869 |
Target: 5'- aCCGGGCCGggccGGCGcgcaCCGCCuCGCg -3' miRNA: 3'- aGGUCCGGCagcaCCGCc---GGCGG-GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 1686 | 0.67 | 0.442613 |
Target: 5'- gCCGGGCgccauggCGUCGgugguccccgaGGCcGCCGCCCGg -3' miRNA: 3'- aGGUCCG-------GCAGCa----------CCGcCGGCGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 1865 | 0.7 | 0.300714 |
Target: 5'- -aCAGGCgCG-CGUGcGCGGCCuCCaCGCg -3' miRNA: 3'- agGUCCG-GCaGCAC-CGCCGGcGG-GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 1903 | 0.66 | 0.513934 |
Target: 5'- cCCGGGCCGaacaCGcGGCccgaGGCCaGCaCCGUg -3' miRNA: 3'- aGGUCCGGCa---GCaCCG----CCGG-CG-GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 2175 | 0.66 | 0.532282 |
Target: 5'- cCCAGcGCCGacaCGUcGGgGGCgccgguccaauUGCCCGCc -3' miRNA: 3'- aGGUC-CGGCa--GCA-CCgCCG-----------GCGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 2774 | 0.66 | 0.513934 |
Target: 5'- -gCGGGCCugcGcCGcGGCGGCCcgggGCgCCGCg -3' miRNA: 3'- agGUCCGG---CaGCaCCGCCGG----CG-GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 2923 | 0.68 | 0.394333 |
Target: 5'- gUCgCGGGCCGcCGccuccgGGCGGCCgGgCCGg -3' miRNA: 3'- -AG-GUCCGGCaGCa-----CCGCCGG-CgGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 2983 | 0.69 | 0.3636 |
Target: 5'- cCCGcGGCgCGgggaggCGgcGGCGGCCGCCagCGCg -3' miRNA: 3'- aGGU-CCG-GCa-----GCa-CCGCCGGCGG--GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 3161 | 0.66 | 0.523077 |
Target: 5'- aCCAGGCUcaCGgcgcgcacGGCGGCCacggcgGCCuCGCu -3' miRNA: 3'- aGGUCCGGcaGCa-------CCGCCGG------CGG-GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 3289 | 0.68 | 0.397497 |
Target: 5'- gCgGGGCgCGUCGgcgugcGGCGGCggcggggaagcgggGCCCGCg -3' miRNA: 3'- aGgUCCG-GCAGCa-----CCGCCGg-------------CGGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 3424 | 0.67 | 0.435032 |
Target: 5'- cUCCAGGaucCCG-CGgcaGGCGGCCaggcacucgacgGCCaCGCg -3' miRNA: 3'- -AGGUCC---GGCaGCa--CCGCCGG------------CGG-GCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 3818 | 0.71 | 0.246564 |
Target: 5'- gCCAGGCCccaGcCGaaGCGGCCGgCCGCc -3' miRNA: 3'- aGGUCCGG---CaGCacCGCCGGCgGGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 4156 | 0.67 | 0.432522 |
Target: 5'- cCCAGGCCGcCGUacagcacccgccccGGgGGCggggGCCCGg -3' miRNA: 3'- aGGUCCGGCaGCA--------------CCgCCGg---CGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 4295 | 0.68 | 0.410317 |
Target: 5'- gCCcGGCCGUgaagcggccCGUGGCGucGCgGCCgGCc -3' miRNA: 3'- aGGuCCGGCA---------GCACCGC--CGgCGGgCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 4434 | 0.68 | 0.378757 |
Target: 5'- cCCGGGCgGg---GGCGGCgucCGCCCGg -3' miRNA: 3'- aGGUCCGgCagcaCCGCCG---GCGGGCg -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 4634 | 0.67 | 0.451979 |
Target: 5'- gCCAccGGCCGUgacgacgucucCGcGGCGGCUggGCCgGCg -3' miRNA: 3'- aGGU--CCGGCA-----------GCaCCGCCGG--CGGgCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 4685 | 0.66 | 0.523077 |
Target: 5'- -aCAGGCgGUcCGUGGggucCGGauaCGCgCCGCg -3' miRNA: 3'- agGUCCGgCA-GCACC----GCCg--GCG-GGCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 4742 | 0.72 | 0.235685 |
Target: 5'- cCCGGGCCGg---GGCccGGUCGCCgGCg -3' miRNA: 3'- aGGUCCGGCagcaCCG--CCGGCGGgCG- -5' |
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5563 | 5' | -65.4 | NC_001806.1 | + | 5078 | 0.73 | 0.182872 |
Target: 5'- gUCUGGGCuCGggGUgGGCGGCgGCCCGUc -3' miRNA: 3'- -AGGUCCG-GCagCA-CCGCCGgCGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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