miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 1462 0.72 0.210244
Target:  5'- cCCGGGCCGUCGUcGUcGCCGCgCaGCa -3'
miRNA:   3'- aGGUCCGGCAGCAcCGcCGGCGgG-CG- -5'
5563 5' -65.4 NC_001806.1 + 1559 0.69 0.348869
Target:  5'- aCCGGGCCGggccGGCGcgcaCCGCCuCGCg -3'
miRNA:   3'- aGGUCCGGCagcaCCGCc---GGCGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 1686 0.67 0.442613
Target:  5'- gCCGGGCgccauggCGUCGgugguccccgaGGCcGCCGCCCGg -3'
miRNA:   3'- aGGUCCG-------GCAGCa----------CCGcCGGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 1865 0.7 0.300714
Target:  5'- -aCAGGCgCG-CGUGcGCGGCCuCCaCGCg -3'
miRNA:   3'- agGUCCG-GCaGCAC-CGCCGGcGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 1903 0.66 0.513934
Target:  5'- cCCGGGCCGaacaCGcGGCccgaGGCCaGCaCCGUg -3'
miRNA:   3'- aGGUCCGGCa---GCaCCG----CCGG-CG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 2175 0.66 0.532282
Target:  5'- cCCAGcGCCGacaCGUcGGgGGCgccgguccaauUGCCCGCc -3'
miRNA:   3'- aGGUC-CGGCa--GCA-CCgCCG-----------GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 2774 0.66 0.513934
Target:  5'- -gCGGGCCugcGcCGcGGCGGCCcgggGCgCCGCg -3'
miRNA:   3'- agGUCCGG---CaGCaCCGCCGG----CG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 2923 0.68 0.394333
Target:  5'- gUCgCGGGCCGcCGccuccgGGCGGCCgGgCCGg -3'
miRNA:   3'- -AG-GUCCGGCaGCa-----CCGCCGG-CgGGCg -5'
5563 5' -65.4 NC_001806.1 + 2983 0.69 0.3636
Target:  5'- cCCGcGGCgCGgggaggCGgcGGCGGCCGCCagCGCg -3'
miRNA:   3'- aGGU-CCG-GCa-----GCa-CCGCCGGCGG--GCG- -5'
5563 5' -65.4 NC_001806.1 + 3161 0.66 0.523077
Target:  5'- aCCAGGCUcaCGgcgcgcacGGCGGCCacggcgGCCuCGCu -3'
miRNA:   3'- aGGUCCGGcaGCa-------CCGCCGG------CGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 3289 0.68 0.397497
Target:  5'- gCgGGGCgCGUCGgcgugcGGCGGCggcggggaagcgggGCCCGCg -3'
miRNA:   3'- aGgUCCG-GCAGCa-----CCGCCGg-------------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 3424 0.67 0.435032
Target:  5'- cUCCAGGaucCCG-CGgcaGGCGGCCaggcacucgacgGCCaCGCg -3'
miRNA:   3'- -AGGUCC---GGCaGCa--CCGCCGG------------CGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 3818 0.71 0.246564
Target:  5'- gCCAGGCCccaGcCGaaGCGGCCGgCCGCc -3'
miRNA:   3'- aGGUCCGG---CaGCacCGCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 4156 0.67 0.432522
Target:  5'- cCCAGGCCGcCGUacagcacccgccccGGgGGCggggGCCCGg -3'
miRNA:   3'- aGGUCCGGCaGCA--------------CCgCCGg---CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 4295 0.68 0.410317
Target:  5'- gCCcGGCCGUgaagcggccCGUGGCGucGCgGCCgGCc -3'
miRNA:   3'- aGGuCCGGCA---------GCACCGC--CGgCGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 4434 0.68 0.378757
Target:  5'- cCCGGGCgGg---GGCGGCgucCGCCCGg -3'
miRNA:   3'- aGGUCCGgCagcaCCGCCG---GCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 4634 0.67 0.451979
Target:  5'- gCCAccGGCCGUgacgacgucucCGcGGCGGCUggGCCgGCg -3'
miRNA:   3'- aGGU--CCGGCA-----------GCaCCGCCGG--CGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 4685 0.66 0.523077
Target:  5'- -aCAGGCgGUcCGUGGggucCGGauaCGCgCCGCg -3'
miRNA:   3'- agGUCCGgCA-GCACC----GCCg--GCG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 4742 0.72 0.235685
Target:  5'- cCCGGGCCGg---GGCccGGUCGCCgGCg -3'
miRNA:   3'- aGGUCCGGCagcaCCG--CCGGCGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 5078 0.73 0.182872
Target:  5'- gUCUGGGCuCGggGUgGGCGGCgGCCCGUc -3'
miRNA:   3'- -AGGUCCG-GCagCA-CCGCCGgCGGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.