miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 134226 0.66 0.532282
Target:  5'- -aUAGGCCacgcaGUCGgagcgggggGGCGGCC-CCgGCa -3'
miRNA:   3'- agGUCCGG-----CAGCa--------CCGCCGGcGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 23065 0.76 0.115978
Target:  5'- gCgAGGCCGcCGUGGCcGCCGUgCGCg -3'
miRNA:   3'- aGgUCCGGCaGCACCGcCGGCGgGCG- -5'
5563 5' -65.4 NC_001806.1 + 86653 0.76 0.115978
Target:  5'- cCCAcGGCCGUCagcccGGCGGCCGUgaggCCGCg -3'
miRNA:   3'- aGGU-CCGGCAGca---CCGCCGGCG----GGCG- -5'
5563 5' -65.4 NC_001806.1 + 102191 0.76 0.121771
Target:  5'- cCCAgGGCCGUUaugGUGuucGCGGuuGCCCGCa -3'
miRNA:   3'- aGGU-CCGGCAG---CAC---CGCCggCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 21915 0.75 0.13745
Target:  5'- gCCGGGCCcgcgCGgcGGUGGCCGgCCGCg -3'
miRNA:   3'- aGGUCCGGca--GCa-CCGCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 77384 0.75 0.144226
Target:  5'- -aCGGGCgCGggCGcGGCGGCCgcGCCCGCg -3'
miRNA:   3'- agGUCCG-GCa-GCaCCGCCGG--CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 81354 0.75 0.151306
Target:  5'- aCCAGGCgGcCGgGGC-GUCGCCCGCg -3'
miRNA:   3'- aGGUCCGgCaGCaCCGcCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 22389 0.75 0.152759
Target:  5'- -gCGGGCCGUgccccaccugggcuaCGccaUGGCGGCCGgCCGCu -3'
miRNA:   3'- agGUCCGGCA---------------GC---ACCGCCGGCgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 32942 0.74 0.162518
Target:  5'- gCCGGGCCGUUGUGG-GGCCccggGCCgGg -3'
miRNA:   3'- aGGUCCGGCAGCACCgCCGG----CGGgCg -5'
5563 5' -65.4 NC_001806.1 + 120124 0.77 0.111529
Target:  5'- aUCCGGGCCG-CGcuucagGGCGGCCcgcgaaucucacagcGCCUGCg -3'
miRNA:   3'- -AGGUCCGGCaGCa-----CCGCCGG---------------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 127768 0.77 0.110442
Target:  5'- -gCGGGCC--UGUGGCGGCCGUCuCGCg -3'
miRNA:   3'- agGUCCGGcaGCACCGCCGGCGG-GCG- -5'
5563 5' -65.4 NC_001806.1 + 23313 0.77 0.105155
Target:  5'- gCCcGGCCGccCGgaGGCGGCgGCCCGCg -3'
miRNA:   3'- aGGuCCGGCa-GCa-CCGCCGgCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 22787 0.85 0.027644
Target:  5'- cCCAGGCCGgccgCGUGGCcgucgagugccuGGCCGCCUGCc -3'
miRNA:   3'- aGGUCCGGCa---GCACCG------------CCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 38383 0.82 0.044889
Target:  5'- uUCCAGGUCGUCGcGGCGGCucucCGCCgGCu -3'
miRNA:   3'- -AGGUCCGGCAGCaCCGCCG----GCGGgCG- -5'
5563 5' -65.4 NC_001806.1 + 23467 0.8 0.063941
Target:  5'- cCCGGGCCGcCGcGGCgcaGGcCCGCCCGCg -3'
miRNA:   3'- aGGUCCGGCaGCaCCG---CC-GGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 73453 0.78 0.088468
Target:  5'- cCCAGGCCGggGUGGcCGGCCcGgCCGCc -3'
miRNA:   3'- aGGUCCGGCagCACC-GCCGG-CgGGCG- -5'
5563 5' -65.4 NC_001806.1 + 144949 0.78 0.09296
Target:  5'- gCCAacGGCCGgccccCGUGGCGGCCcgGCCCGg -3'
miRNA:   3'- aGGU--CCGGCa----GCACCGCCGG--CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 50401 0.77 0.097669
Target:  5'- cUCUcGGUgGUCGUGGgGGCgCGCCUGCa -3'
miRNA:   3'- -AGGuCCGgCAGCACCgCCG-GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 79723 0.77 0.099369
Target:  5'- cCCAGGCUucCGcgaccacccaggguUGGCGGCCGCCUGCc -3'
miRNA:   3'- aGGUCCGGcaGC--------------ACCGCCGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 128035 0.77 0.105155
Target:  5'- gCCAGGCCGacgaugccCGUGGCGGCCacgGCCCcCa -3'
miRNA:   3'- aGGUCCGGCa-------GCACCGCCGG---CGGGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.