miRNA display CGI


Results 21 - 40 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5563 5' -65.4 NC_001806.1 + 105697 0.66 0.512113
Target:  5'- cCCAGGgcucgcagccaaCGUCGgGGCGGCaaGCCCuGCc -3'
miRNA:   3'- aGGUCCg-----------GCAGCaCCGCCGg-CGGG-CG- -5'
5563 5' -65.4 NC_001806.1 + 123199 0.66 0.511203
Target:  5'- cCCGGGUCGcCcgcaggGUGGCGgaauggaccgagauGCCGCCCacGCg -3'
miRNA:   3'- aGGUCCGGCaG------CACCGC--------------CGGCGGG--CG- -5'
5563 5' -65.4 NC_001806.1 + 81950 0.66 0.504856
Target:  5'- cCCGGGaCCGcCGgguucGGCGGCgacggguaauaGCCUGCu -3'
miRNA:   3'- aGGUCC-GGCaGCa----CCGCCGg----------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 50710 0.66 0.504856
Target:  5'- gCCGGGCuCGUCcUGcaGCGGCUGCUgGg -3'
miRNA:   3'- aGGUCCG-GCAGcAC--CGCCGGCGGgCg -5'
5563 5' -65.4 NC_001806.1 + 50501 0.66 0.504856
Target:  5'- gCCccGCgGUCGUGGgGGCCGa--GCa -3'
miRNA:   3'- aGGucCGgCAGCACCgCCGGCgggCG- -5'
5563 5' -65.4 NC_001806.1 + 22165 0.66 0.504856
Target:  5'- uUCgAGGCC-UCGggcgccccGGCGGCCgugugggcGCCCGa -3'
miRNA:   3'- -AGgUCCGGcAGCa-------CCGCCGG--------CGGGCg -5'
5563 5' -65.4 NC_001806.1 + 20088 0.66 0.504856
Target:  5'- cUCCc-GUCGuUCGUGGCcggcGCCGUCUGCg -3'
miRNA:   3'- -AGGucCGGC-AGCACCGc---CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 146078 0.66 0.504856
Target:  5'- gCCAGGUCaGUcCG-GGCGGgcaggCGCUCGCg -3'
miRNA:   3'- aGGUCCGG-CA-GCaCCGCCg----GCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 96502 0.66 0.504856
Target:  5'- cCCAGGCgG-CGaacgggGGCccugccacuccgGcGCCGCCCGCc -3'
miRNA:   3'- aGGUCCGgCaGCa-----CCG------------C-CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 66820 0.66 0.504856
Target:  5'- gCgGGGCCGgccCG-GGUGGCCgguguGCgCCGCc -3'
miRNA:   3'- aGgUCCGGCa--GCaCCGCCGG-----CG-GGCG- -5'
5563 5' -65.4 NC_001806.1 + 151448 0.66 0.502147
Target:  5'- --gGGGCgG-CGgcggGGCGGCCGCgggcgcgcuccugaCCGCg -3'
miRNA:   3'- aggUCCGgCaGCa---CCGCCGGCG--------------GGCG- -5'
5563 5' -65.4 NC_001806.1 + 75649 0.66 0.499443
Target:  5'- cUUgAGGCCGccaccgcCGaccucagagagaagaUGGCGGCCcagcgcGCCCGCa -3'
miRNA:   3'- -AGgUCCGGCa------GC---------------ACCGCCGG------CGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 136534 0.66 0.495849
Target:  5'- -aCGGGCCGcUCG----GGCCGCCCGg -3'
miRNA:   3'- agGUCCGGC-AGCaccgCCGGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 53257 0.66 0.495849
Target:  5'- cCCGGGCCGcacCG-GGCccccGCC-CCCGCc -3'
miRNA:   3'- aGGUCCGGCa--GCaCCGc---CGGcGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 90884 0.66 0.495849
Target:  5'- aCguGGaCGcCGUGGCccgcgcGGCCGCCCa- -3'
miRNA:   3'- aGguCCgGCaGCACCG------CCGGCGGGcg -5'
5563 5' -65.4 NC_001806.1 + 73558 0.66 0.495849
Target:  5'- gCCuGGCCGaCGUGGCcGCCcaucuGCCCc- -3'
miRNA:   3'- aGGuCCGGCaGCACCGcCGG-----CGGGcg -5'
5563 5' -65.4 NC_001806.1 + 44444 0.66 0.495849
Target:  5'- -gCAGGCCG-CG-GGCccGG-CGUCCGCg -3'
miRNA:   3'- agGUCCGGCaGCaCCG--CCgGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 83164 0.66 0.495849
Target:  5'- cUCCugacGGCCaGUcaCGUgauaGGUGuGCCGCCCGUc -3'
miRNA:   3'- -AGGu---CCGG-CA--GCA----CCGC-CGGCGGGCG- -5'
5563 5' -65.4 NC_001806.1 + 58328 0.66 0.495849
Target:  5'- gUCUuGG-CGU--UGGCGGCCGCCUGg -3'
miRNA:   3'- -AGGuCCgGCAgcACCGCCGGCGGGCg -5'
5563 5' -65.4 NC_001806.1 + 27835 0.66 0.495849
Target:  5'- gCCGGGuuGgucccCGgGGacggGGCCGCcCCGCg -3'
miRNA:   3'- aGGUCCggCa----GCaCCg---CCGGCG-GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.