miRNA display CGI


Results 61 - 75 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 134983 0.68 0.4985
Target:  5'- -cGGCGGCcaucccggugcccgaUG-CCCCCGCcCuGGUCCg -3'
miRNA:   3'- auUCGCCG---------------ACaGGGGGCGcGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 58014 0.68 0.494821
Target:  5'- --cGUGGCUGaCCgcgUCCGaCGCGGaGUCCu -3'
miRNA:   3'- auuCGCCGACaGG---GGGC-GCGCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 24905 0.68 0.485678
Target:  5'- gAGGCgGGCuUGgccacgCCCCCGCGgCGGGa-- -3'
miRNA:   3'- aUUCG-CCG-ACa-----GGGGGCGC-GCCCagg -5'
5564 3' -62.9 NC_001806.1 + 41482 0.68 0.476617
Target:  5'- cAGGCGaGC-GUCCCgCGUuauGCGGGcCCa -3'
miRNA:   3'- aUUCGC-CGaCAGGGgGCG---CGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 102987 0.68 0.467641
Target:  5'- --cGcCGGCUcaUCCCCGCGCGcGGcaUCCg -3'
miRNA:   3'- auuC-GCCGAcaGGGGGCGCGC-CC--AGG- -5'
5564 3' -62.9 NC_001806.1 + 38396 0.68 0.467641
Target:  5'- -cGGCGGCUcUCCgCCgGCucggGgGGGUCCu -3'
miRNA:   3'- auUCGCCGAcAGG-GGgCG----CgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 4348 0.68 0.463185
Target:  5'- -cGGCGGCgcucgaugcggCCCgcggaggCCGCGgGGGUCCu -3'
miRNA:   3'- auUCGCCGaca--------GGG-------GGCGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 45282 0.68 0.456985
Target:  5'- -uAGCGGCgGgagacgcgggCCCGCGCGGGgagCCg -3'
miRNA:   3'- auUCGCCGaCagg-------GGGCGCGCCCa--GG- -5'
5564 3' -62.9 NC_001806.1 + 3931 0.68 0.45083
Target:  5'- gAAGCaGGCcugguccagcgccacGUCCCCggggaccaCGCGCGGGUUCu -3'
miRNA:   3'- aUUCG-CCGa--------------CAGGGG--------GCGCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 87295 0.68 0.449954
Target:  5'- --uGcCGGCgGUCUCCCGCGCGcccUCCg -3'
miRNA:   3'- auuC-GCCGaCAGGGGGCGCGCcc-AGG- -5'
5564 3' -62.9 NC_001806.1 + 119592 0.68 0.449954
Target:  5'- -uGGCGGguCUGgagcCCCCCG-GCGGGggCCg -3'
miRNA:   3'- auUCGCC--GACa---GGGGGCgCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 78886 0.69 0.44125
Target:  5'- -uGGCGGCacagCUCCCGCGCcuGUCCg -3'
miRNA:   3'- auUCGCCGaca-GGGGGCGCGccCAGG- -5'
5564 3' -62.9 NC_001806.1 + 27134 0.69 0.440385
Target:  5'- gAGGCGGCcuggGUCUUCCGCGgagcuccCGGGagcUCCg -3'
miRNA:   3'- aUUCGCCGa---CAGGGGGCGC-------GCCC---AGG- -5'
5564 3' -62.9 NC_001806.1 + 20823 0.69 0.419075
Target:  5'- --cGCGGCUG-CCgacacggauccacgaCCCGaCGCGGGaCCg -3'
miRNA:   3'- auuCGCCGACaGG---------------GGGC-GCGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 131008 1.09 0.000639
Target:  5'- cUAAGCGGCUGUCCCCCGCGCGGGUCCg -3'
miRNA:   3'- -AUUCGCCGACAGGGGGCGCGCCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.