miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 126571 0.66 0.59953
Target:  5'- aAGGCGGUgcUCCgCCGCGgauCGGG-CCu -3'
miRNA:   3'- aUUCGCCGacAGGgGGCGC---GCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 67479 0.66 0.59953
Target:  5'- -cAGCGuGCUGgccgCCCUC-CG-GGGUCCc -3'
miRNA:   3'- auUCGC-CGACa---GGGGGcGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 55728 0.66 0.570393
Target:  5'- -uGGCGGCUGacccgggggaCCCCGaUGUGGGggCCu -3'
miRNA:   3'- auUCGCCGACag--------GGGGC-GCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 88940 0.66 0.609294
Target:  5'- --uGgGGUUGaaCCCCGCcgggGCGuGGUCCa -3'
miRNA:   3'- auuCgCCGACagGGGGCG----CGC-CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 148777 0.66 0.59953
Target:  5'- gGGGgGGCg--CCCCCGCaacuGCcgGGGUCUu -3'
miRNA:   3'- aUUCgCCGacaGGGGGCG----CG--CCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 151459 0.66 0.59953
Target:  5'- gGGGCGGCcgcgGgcgcgCUCCUGacCGCGGGuUCCg -3'
miRNA:   3'- aUUCGCCGa---Ca----GGGGGC--GCGCCC-AGG- -5'
5564 3' -62.9 NC_001806.1 + 3115 0.66 0.609294
Target:  5'- -cGGCaGGCgcggGUCCCgCggcaGCGCGGGgCCc -3'
miRNA:   3'- auUCG-CCGa---CAGGG-Gg---CGCGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 68586 0.66 0.609294
Target:  5'- --cGCGGCgg-CCCUgGgGCcGGUCCg -3'
miRNA:   3'- auuCGCCGacaGGGGgCgCGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 99957 0.66 0.59953
Target:  5'- --cGcCGGgaGUCgaCCCCGCGCGGcGcgCCu -3'
miRNA:   3'- auuC-GCCgaCAG--GGGGCGCGCC-Ca-GG- -5'
5564 3' -62.9 NC_001806.1 + 89520 0.66 0.59953
Target:  5'- cGGGCGGCgagCUgCUGCGCGGcGcCCc -3'
miRNA:   3'- aUUCGCCGacaGGgGGCGCGCC-CaGG- -5'
5564 3' -62.9 NC_001806.1 + 5514 0.66 0.569427
Target:  5'- gAGGCcGCcgGcCCCCCGCccccccgGCGGGcCCa -3'
miRNA:   3'- aUUCGcCGa-CaGGGGGCG-------CGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 4937 0.66 0.609294
Target:  5'- --cGcCGGCgucgGUgCCCgCCGCGgGGGcCCu -3'
miRNA:   3'- auuC-GCCGa---CA-GGG-GGCGCgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 65651 0.66 0.59953
Target:  5'- -cGGCGGCc-UCCCCCuggguggcuGCGCuGGGgCCg -3'
miRNA:   3'- auUCGCCGacAGGGGG---------CGCG-CCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 23541 0.66 0.609294
Target:  5'- cUGGGCGGCUGgcggcggcagCCCCCG---GGGcCCa -3'
miRNA:   3'- -AUUCGCCGACa---------GGGGGCgcgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 75343 0.66 0.609294
Target:  5'- aAGGCgacucGGUUGgCCCUggaCGCGCGGGUggCCa -3'
miRNA:   3'- aUUCG-----CCGACaGGGG---GCGCGCCCA--GG- -5'
5564 3' -62.9 NC_001806.1 + 100108 0.66 0.589787
Target:  5'- -cGGcCGGCUGaCCgCCCGCcugGC-GGUCCg -3'
miRNA:   3'- auUC-GCCGACaGG-GGGCG---CGcCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 4442 0.66 0.59953
Target:  5'- gGGGCGGC-GUCCgCC-CGgGGGcugCCg -3'
miRNA:   3'- aUUCGCCGaCAGGgGGcGCgCCCa--GG- -5'
5564 3' -62.9 NC_001806.1 + 3575 0.66 0.569427
Target:  5'- aGGGCGGCgagGaUCCCCGCggcgccguacccgGCGGGcaCCg -3'
miRNA:   3'- aUUCGCCGa--CaGGGGGCG-------------CGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 19623 0.66 0.588814
Target:  5'- -cAGUGGCUucCCCCCGCcCGacgagcaggaagcGGUCCa -3'
miRNA:   3'- auUCGCCGAcaGGGGGCGcGC-------------CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 4143 0.66 0.568461
Target:  5'- cGGGCGGCUGUCgCCCaggccgccguacaGCacccgccccggggGCGGGggcCCg -3'
miRNA:   3'- aUUCGCCGACAGgGGG-------------CG-------------CGCCCa--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.