miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 3115 0.66 0.609294
Target:  5'- -cGGCaGGCgcggGUCCCgCggcaGCGCGGGgCCc -3'
miRNA:   3'- auUCG-CCGa---CAGGG-Gg---CGCGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 3515 0.7 0.391124
Target:  5'- cGGGCGGCgucgggGUcgucgcCCCCCGCGgGGGa-- -3'
miRNA:   3'- aUUCGCCGa-----CA------GGGGGCGCgCCCagg -5'
5564 3' -62.9 NC_001806.1 + 3575 0.66 0.569427
Target:  5'- aGGGCGGCgagGaUCCCCGCggcgccguacccgGCGGGcaCCg -3'
miRNA:   3'- aUUCGCCGa--CaGGGGGCG-------------CGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 3931 0.68 0.45083
Target:  5'- gAAGCaGGCcugguccagcgccacGUCCCCggggaccaCGCGCGGGUUCu -3'
miRNA:   3'- aUUCG-CCGa--------------CAGGGG--------GCGCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 4143 0.66 0.568461
Target:  5'- cGGGCGGCUGUCgCCCaggccgccguacaGCacccgccccggggGCGGGggcCCg -3'
miRNA:   3'- aUUCGCCGACAGgGGG-------------CG-------------CGCCCa--GG- -5'
5564 3' -62.9 NC_001806.1 + 4322 0.73 0.252744
Target:  5'- --cGCGGCcGgccaCCgCCGCGCGGGcCCg -3'
miRNA:   3'- auuCGCCGaCa---GGgGGCGCGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 4348 0.68 0.463185
Target:  5'- -cGGCGGCgcucgaugcggCCCgcggaggCCGCGgGGGUCCu -3'
miRNA:   3'- auUCGCCGaca--------GGG-------GGCGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 4442 0.66 0.59953
Target:  5'- gGGGCGGC-GUCCgCC-CGgGGGcugCCg -3'
miRNA:   3'- aUUCGCCGaCAGGgGGcGCgCCCa--GG- -5'
5564 3' -62.9 NC_001806.1 + 4937 0.66 0.609294
Target:  5'- --cGcCGGCgucgGUgCCCgCCGCGgGGGcCCu -3'
miRNA:   3'- auuC-GCCGa---CA-GGG-GGCGCgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 5374 0.67 0.535913
Target:  5'- --cGCGGCgagcgucugacggucUGUCUcuggcgguCCCGCGuCGGGUCg -3'
miRNA:   3'- auuCGCCG---------------ACAGG--------GGGCGC-GCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 5514 0.66 0.569427
Target:  5'- gAGGCcGCcgGcCCCCCGCccccccgGCGGGcCCa -3'
miRNA:   3'- aUUCGcCGa-CaGGGGGCG-------CGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 12891 0.67 0.522697
Target:  5'- --uGCGGCgccaccGUCCCCa-CG-GGGUCCu -3'
miRNA:   3'- auuCGCCGa-----CAGGGGgcGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 15724 0.67 0.541613
Target:  5'- cGGGCGaUUGUUCCcggCCGCGCGGGagCg -3'
miRNA:   3'- aUUCGCcGACAGGG---GGCGCGCCCagG- -5'
5564 3' -62.9 NC_001806.1 + 18947 0.71 0.330339
Target:  5'- cAGGCGGUUGgcaCUgCGUGgGGGUCCc -3'
miRNA:   3'- aUUCGCCGACag-GGgGCGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 19623 0.66 0.588814
Target:  5'- -cAGUGGCUucCCCCCGCcCGacgagcaggaagcGGUCCa -3'
miRNA:   3'- auUCGCCGAcaGGGGGCGcGC-------------CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 20823 0.69 0.419075
Target:  5'- --cGCGGCUG-CCgacacggauccacgaCCCGaCGCGGGaCCg -3'
miRNA:   3'- auuCGCCGACaGG---------------GGGC-GCGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 21290 0.69 0.407419
Target:  5'- cGGGaCGGgaGggCCCCCGCGgCGGGcaCCg -3'
miRNA:   3'- aUUC-GCCgaCa-GGGGGCGC-GCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 21808 0.7 0.383137
Target:  5'- cGGGCGGaCgccgCCCCCGCcCGGG-CCa -3'
miRNA:   3'- aUUCGCC-Gaca-GGGGGCGcGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 21870 0.72 0.263953
Target:  5'- -cGGCGGCgagGaCCCCCGCggccuccGCGGG-CCg -3'
miRNA:   3'- auUCGCCGa--CaGGGGGCG-------CGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 22275 0.72 0.270624
Target:  5'- gGGGUGGCUccagaaCCCGCGCGuGGUCCc -3'
miRNA:   3'- aUUCGCCGAcagg--GGGCGCGC-CCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.