Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 3115 | 0.66 | 0.609294 |
Target: 5'- -cGGCaGGCgcggGUCCCgCggcaGCGCGGGgCCc -3' miRNA: 3'- auUCG-CCGa---CAGGG-Gg---CGCGCCCaGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 3515 | 0.7 | 0.391124 |
Target: 5'- cGGGCGGCgucgggGUcgucgcCCCCCGCGgGGGa-- -3' miRNA: 3'- aUUCGCCGa-----CA------GGGGGCGCgCCCagg -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 3575 | 0.66 | 0.569427 |
Target: 5'- aGGGCGGCgagGaUCCCCGCggcgccguacccgGCGGGcaCCg -3' miRNA: 3'- aUUCGCCGa--CaGGGGGCG-------------CGCCCa-GG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 3931 | 0.68 | 0.45083 |
Target: 5'- gAAGCaGGCcugguccagcgccacGUCCCCggggaccaCGCGCGGGUUCu -3' miRNA: 3'- aUUCG-CCGa--------------CAGGGG--------GCGCGCCCAGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 4143 | 0.66 | 0.568461 |
Target: 5'- cGGGCGGCUGUCgCCCaggccgccguacaGCacccgccccggggGCGGGggcCCg -3' miRNA: 3'- aUUCGCCGACAGgGGG-------------CG-------------CGCCCa--GG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 4322 | 0.73 | 0.252744 |
Target: 5'- --cGCGGCcGgccaCCgCCGCGCGGGcCCg -3' miRNA: 3'- auuCGCCGaCa---GGgGGCGCGCCCaGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 4348 | 0.68 | 0.463185 |
Target: 5'- -cGGCGGCgcucgaugcggCCCgcggaggCCGCGgGGGUCCu -3' miRNA: 3'- auUCGCCGaca--------GGG-------GGCGCgCCCAGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 4442 | 0.66 | 0.59953 |
Target: 5'- gGGGCGGC-GUCCgCC-CGgGGGcugCCg -3' miRNA: 3'- aUUCGCCGaCAGGgGGcGCgCCCa--GG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 4937 | 0.66 | 0.609294 |
Target: 5'- --cGcCGGCgucgGUgCCCgCCGCGgGGGcCCu -3' miRNA: 3'- auuC-GCCGa---CA-GGG-GGCGCgCCCaGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 5374 | 0.67 | 0.535913 |
Target: 5'- --cGCGGCgagcgucugacggucUGUCUcuggcgguCCCGCGuCGGGUCg -3' miRNA: 3'- auuCGCCG---------------ACAGG--------GGGCGC-GCCCAGg -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 5514 | 0.66 | 0.569427 |
Target: 5'- gAGGCcGCcgGcCCCCCGCccccccgGCGGGcCCa -3' miRNA: 3'- aUUCGcCGa-CaGGGGGCG-------CGCCCaGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 12891 | 0.67 | 0.522697 |
Target: 5'- --uGCGGCgccaccGUCCCCa-CG-GGGUCCu -3' miRNA: 3'- auuCGCCGa-----CAGGGGgcGCgCCCAGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 15724 | 0.67 | 0.541613 |
Target: 5'- cGGGCGaUUGUUCCcggCCGCGCGGGagCg -3' miRNA: 3'- aUUCGCcGACAGGG---GGCGCGCCCagG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 18947 | 0.71 | 0.330339 |
Target: 5'- cAGGCGGUUGgcaCUgCGUGgGGGUCCc -3' miRNA: 3'- aUUCGCCGACag-GGgGCGCgCCCAGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 19623 | 0.66 | 0.588814 |
Target: 5'- -cAGUGGCUucCCCCCGCcCGacgagcaggaagcGGUCCa -3' miRNA: 3'- auUCGCCGAcaGGGGGCGcGC-------------CCAGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 20823 | 0.69 | 0.419075 |
Target: 5'- --cGCGGCUG-CCgacacggauccacgaCCCGaCGCGGGaCCg -3' miRNA: 3'- auuCGCCGACaGG---------------GGGC-GCGCCCaGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 21290 | 0.69 | 0.407419 |
Target: 5'- cGGGaCGGgaGggCCCCCGCGgCGGGcaCCg -3' miRNA: 3'- aUUC-GCCgaCa-GGGGGCGC-GCCCa-GG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 21808 | 0.7 | 0.383137 |
Target: 5'- cGGGCGGaCgccgCCCCCGCcCGGG-CCa -3' miRNA: 3'- aUUCGCC-Gaca-GGGGGCGcGCCCaGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 21870 | 0.72 | 0.263953 |
Target: 5'- -cGGCGGCgagGaCCCCCGCggccuccGCGGG-CCg -3' miRNA: 3'- auUCGCCGa--CaGGGGGCG-------CGCCCaGG- -5' |
|||||||
5564 | 3' | -62.9 | NC_001806.1 | + | 22275 | 0.72 | 0.270624 |
Target: 5'- gGGGUGGCUccagaaCCCGCGCGuGGUCCc -3' miRNA: 3'- aUUCGCCGAcagg--GGGCGCGC-CCAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home