miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 3' -62.9 NC_001806.1 + 30724 0.66 0.619074
Target:  5'- ---uCGGCcccGaCCCCCGCGgGGG-CCg -3'
miRNA:   3'- auucGCCGa--CaGGGGGCGCgCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 113151 0.7 0.37526
Target:  5'- -cAGCGcCUGgCCCaCGgGCGGGUCCg -3'
miRNA:   3'- auUCGCcGACaGGGgGCgCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 86050 0.7 0.383137
Target:  5'- gGGGCgGGCUcGUCCCCUgggGCGgCGGcGUCUa -3'
miRNA:   3'- aUUCG-CCGA-CAGGGGG---CGC-GCC-CAGG- -5'
5564 3' -62.9 NC_001806.1 + 21808 0.7 0.383137
Target:  5'- cGGGCGGaCgccgCCCCCGCcCGGG-CCa -3'
miRNA:   3'- aUUCGCC-Gaca-GGGGGCGcGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 3515 0.7 0.391124
Target:  5'- cGGGCGGCgucgggGUcgucgcCCCCCGCGgGGGa-- -3'
miRNA:   3'- aUUCGCCGa-----CA------GGGGGCGCgCCCagg -5'
5564 3' -62.9 NC_001806.1 + 26884 0.69 0.399218
Target:  5'- --cGCGacccccGCga-CCCCCGCGCGGGUgCg -3'
miRNA:   3'- auuCGC------CGacaGGGGGCGCGCCCAgG- -5'
5564 3' -62.9 NC_001806.1 + 21290 0.69 0.407419
Target:  5'- cGGGaCGGgaGggCCCCCGCGgCGGGcaCCg -3'
miRNA:   3'- aUUC-GCCgaCa-GGGGGCGC-GCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 35311 0.69 0.407419
Target:  5'- gAGGCGGCgcaa-CCCGaCGCGGGUUUa -3'
miRNA:   3'- aUUCGCCGacaggGGGC-GCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 148166 0.69 0.414889
Target:  5'- -cGGCGGCg--CCUCUGCGUGGGggggcgcggggcgUCCg -3'
miRNA:   3'- auUCGCCGacaGGGGGCGCGCCC-------------AGG- -5'
5564 3' -62.9 NC_001806.1 + 18947 0.71 0.330339
Target:  5'- cAGGCGGUUGgcaCUgCGUGgGGGUCCc -3'
miRNA:   3'- aUUCGCCGACag-GGgGCGCgCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 142150 0.72 0.276807
Target:  5'- -uGGCGGC-GUCCCgUCGCGgggugGGGUCCg -3'
miRNA:   3'- auUCGCCGaCAGGG-GGCGCg----CCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 22275 0.72 0.270624
Target:  5'- gGGGUGGCUccagaaCCCGCGCGuGGUCCc -3'
miRNA:   3'- aUUCGCCGAcagg--GGGCGCGC-CCAGG- -5'
5564 3' -62.9 NC_001806.1 + 22692 0.78 0.115152
Target:  5'- gGGGCGGCUGuccgccgcgcccgccUCCCCCGCGgGGGg-- -3'
miRNA:   3'- aUUCGCCGAC---------------AGGGGGCGCgCCCagg -5'
5564 3' -62.9 NC_001806.1 + 147213 0.76 0.148283
Target:  5'- -cGGCGGCggaagaggcggCCCCCGCGgGGGUCg -3'
miRNA:   3'- auUCGCCGaca--------GGGGGCGCgCCCAGg -5'
5564 3' -62.9 NC_001806.1 + 51021 0.75 0.19539
Target:  5'- gUAAGCGGCggGUCCguguugggCC-CGCGGGUCCg -3'
miRNA:   3'- -AUUCGCCGa-CAGGg-------GGcGCGCCCAGG- -5'
5564 3' -62.9 NC_001806.1 + 96378 0.74 0.2098
Target:  5'- -cAG-GGCg--CCCCCGCGCGGGggcgCCg -3'
miRNA:   3'- auUCgCCGacaGGGGGCGCGCCCa---GG- -5'
5564 3' -62.9 NC_001806.1 + 46092 0.74 0.225117
Target:  5'- gGGGCGGUuuUGUCCggcccggggCCUGCGCGGGcgCCu -3'
miRNA:   3'- aUUCGCCG--ACAGG---------GGGCGCGCCCa-GG- -5'
5564 3' -62.9 NC_001806.1 + 4322 0.73 0.252744
Target:  5'- --cGCGGCcGgccaCCgCCGCGCGGGcCCg -3'
miRNA:   3'- auuCGCCGaCa---GGgGGCGCGCCCaGG- -5'
5564 3' -62.9 NC_001806.1 + 69415 0.73 0.258594
Target:  5'- -uGGCGGCgGgcgUCCCCGCGCGGacgCCc -3'
miRNA:   3'- auUCGCCGaCa--GGGGGCGCGCCca-GG- -5'
5564 3' -62.9 NC_001806.1 + 21870 0.72 0.263953
Target:  5'- -cGGCGGCgagGaCCCCCGCggccuccGCGGG-CCg -3'
miRNA:   3'- auUCGCCGa--CaGGGGGCG-------CGCCCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.