miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5564 5' -58.7 NC_001806.1 + 49508 0.66 0.76778
Target:  5'- gGCGGuuCGCG-GGUGGCGCcgucgccgcUGUUCc- -3'
miRNA:   3'- -UGCCugGUGCgCCACCGCG---------ACAAGuu -5'
5564 5' -58.7 NC_001806.1 + 24227 0.66 0.777081
Target:  5'- gACGGGCC-CGCGGUGuCGCgg--CAGc -3'
miRNA:   3'- -UGCCUGGuGCGCCACcGCGacaaGUU- -5'
5564 5' -58.7 NC_001806.1 + 91378 0.66 0.795289
Target:  5'- gUGGACCGCGagggacacGUGGUGCccggGUUCGAg -3'
miRNA:   3'- uGCCUGGUGCgc------CACCGCGa---CAAGUU- -5'
5564 5' -58.7 NC_001806.1 + 91986 0.66 0.786253
Target:  5'- gUGGACCGCGaGGUGGagcaGCUGa---- -3'
miRNA:   3'- uGCCUGGUGCgCCACCg---CGACaaguu -5'
5564 5' -58.7 NC_001806.1 + 96381 0.67 0.719674
Target:  5'- gGCGcccCCGCGCGGgGGCGCcggugGUUCGu -3'
miRNA:   3'- -UGCcu-GGUGCGCCaCCGCGa----CAAGUu -5'
5564 5' -58.7 NC_001806.1 + 55971 0.67 0.719674
Target:  5'- cACGGACCAC-CGGaugggGGUGUgcGUUCGAu -3'
miRNA:   3'- -UGCCUGGUGcGCCa----CCGCGa-CAAGUU- -5'
5564 5' -58.7 NC_001806.1 + 3457 0.67 0.739201
Target:  5'- gACGG-CCACGCGGccGGC-CUGggCGc -3'
miRNA:   3'- -UGCCuGGUGCGCCa-CCGcGACaaGUu -5'
5564 5' -58.7 NC_001806.1 + 37734 0.68 0.639315
Target:  5'- -aGGACCaaccGCGUGGUGGCGUcgaUGgugUCGg -3'
miRNA:   3'- ugCCUGG----UGCGCCACCGCG---ACa--AGUu -5'
5564 5' -58.7 NC_001806.1 + 131982 0.68 0.679805
Target:  5'- aGCGccaGACCGgGcCGGUGGCcCUGUUCGc -3'
miRNA:   3'- -UGC---CUGGUgC-GCCACCGcGACAAGUu -5'
5564 5' -58.7 NC_001806.1 + 96728 0.68 0.679805
Target:  5'- cACGGGCgC-CaCGGUGGUGCaGUUCGAg -3'
miRNA:   3'- -UGCCUG-GuGcGCCACCGCGaCAAGUU- -5'
5564 5' -58.7 NC_001806.1 + 95516 0.68 0.673757
Target:  5'- cGCGGACCGCcugacgaaGCGGUcguuggccagccuggGGCGCUGcgUCc- -3'
miRNA:   3'- -UGCCUGGUG--------CGCCA---------------CCGCGACa-AGuu -5'
5564 5' -58.7 NC_001806.1 + 71367 0.68 0.669719
Target:  5'- gGCGGACCGCGaGGgGGCGCc--UCAu -3'
miRNA:   3'- -UGCCUGGUGCgCCaCCGCGacaAGUu -5'
5564 5' -58.7 NC_001806.1 + 24682 0.68 0.659603
Target:  5'- gGCGGugCGCGCcggcccggcccGGUGGCGCgGgccgCGGa -3'
miRNA:   3'- -UGCCugGUGCG-----------CCACCGCGaCaa--GUU- -5'
5564 5' -58.7 NC_001806.1 + 139842 0.68 0.65859
Target:  5'- -aGGACCgccugccGCGCGGaGGCGUUGUUa-- -3'
miRNA:   3'- ugCCUGG-------UGCGCCaCCGCGACAAguu -5'
5564 5' -58.7 NC_001806.1 + 55545 0.68 0.649466
Target:  5'- gGCGGcccgACUugGCGGgggUGGUGUUGUUCu- -3'
miRNA:   3'- -UGCC----UGGugCGCC---ACCGCGACAAGuu -5'
5564 5' -58.7 NC_001806.1 + 119481 0.69 0.619004
Target:  5'- cGCGGACCGgGCGugcggccuGUGGCGUUGcaUCGGg -3'
miRNA:   3'- -UGCCUGGUgCGC--------CACCGCGACa-AGUU- -5'
5564 5' -58.7 NC_001806.1 + 132777 0.69 0.598732
Target:  5'- cGCGGugCGggagGCGGUGGCGCgGUggCAu -3'
miRNA:   3'- -UGCCugGUg---CGCCACCGCGaCAa-GUu -5'
5564 5' -58.7 NC_001806.1 + 147738 0.69 0.578557
Target:  5'- cACGG-CCGCGCGGgGGCGCgcggGUccCGAc -3'
miRNA:   3'- -UGCCuGGUGCGCCaCCGCGa---CAa-GUU- -5'
5564 5' -58.7 NC_001806.1 + 122938 0.7 0.519129
Target:  5'- -gGGACCACGgucUGGUGGCGCUuGggggUCGc -3'
miRNA:   3'- ugCCUGGUGC---GCCACCGCGA-Ca---AGUu -5'
5564 5' -58.7 NC_001806.1 + 81053 0.71 0.480871
Target:  5'- aGCGGACC-CGCcg-GGCGCUGcUUCAu -3'
miRNA:   3'- -UGCCUGGuGCGccaCCGCGAC-AAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.