miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 3' -53.8 NC_001806.1 + 5350 0.66 0.968856
Target:  5'- uUCGUCC--GCGuAUCGGCGUC-CCGGc -3'
miRNA:   3'- -AGUAGGggUGC-UAGUUGCAGuGGCCu -5'
5565 3' -53.8 NC_001806.1 + 22299 0.66 0.968856
Target:  5'- -gGUCCCCGgGGaCGugG-CGCUGGAc -3'
miRNA:   3'- agUAGGGGUgCUaGUugCaGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 12804 0.66 0.968856
Target:  5'- aUCAggCCCAUGuuguUCGGgGUgGCCGGGg -3'
miRNA:   3'- -AGUagGGGUGCu---AGUUgCAgUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 103881 0.66 0.968856
Target:  5'- gCAUCCgCACGAcugCggUGauaUUACCGGAg -3'
miRNA:   3'- aGUAGGgGUGCUa--GuuGC---AGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 58235 0.66 0.965732
Target:  5'- ---cCCCCGcCGAcCuGCaGUCGCCGGAg -3'
miRNA:   3'- aguaGGGGU-GCUaGuUG-CAGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 16575 0.66 0.962393
Target:  5'- cUCAUCCCgGCugcGUCGuCGUaUACCGGGg -3'
miRNA:   3'- -AGUAGGGgUGc--UAGUuGCA-GUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 99799 0.66 0.965732
Target:  5'- -gGUCCCCcaccugaggGCGAUaguGCGcCACCGGc -3'
miRNA:   3'- agUAGGGG---------UGCUAgu-UGCaGUGGCCu -5'
5565 3' -53.8 NC_001806.1 + 68048 0.66 0.962393
Target:  5'- gUCAUUCCCGCccGGUCu-CGUCGuuGGu -3'
miRNA:   3'- -AGUAGGGGUG--CUAGuuGCAGUggCCu -5'
5565 3' -53.8 NC_001806.1 + 121839 0.66 0.958835
Target:  5'- aCAUCCCCcCGAcCAGC---GCCGGGu -3'
miRNA:   3'- aGUAGGGGuGCUaGUUGcagUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 46064 0.66 0.958835
Target:  5'- -gGUCCCC-CGGacgCGGCGUCccguuuCCGGGg -3'
miRNA:   3'- agUAGGGGuGCUa--GUUGCAGu-----GGCCU- -5'
5565 3' -53.8 NC_001806.1 + 20373 0.67 0.946796
Target:  5'- cCGUCCCguUGGUCccGGCGUCcggcgggcgggACCGGGg -3'
miRNA:   3'- aGUAGGGguGCUAG--UUGCAG-----------UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 7573 0.67 0.946796
Target:  5'- -gAUCCacaCCGCGGUUcGCGUCccgcccACCGGAa -3'
miRNA:   3'- agUAGG---GGUGCUAGuUGCAG------UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 117954 0.68 0.916322
Target:  5'- aCcgCCCgACGA-CAGCGaCGCCGGu -3'
miRNA:   3'- aGuaGGGgUGCUaGUUGCaGUGGCCu -5'
5565 3' -53.8 NC_001806.1 + 102993 0.68 0.916322
Target:  5'- cUCAUCCCCGCGcgCGGCaucCGCCu-- -3'
miRNA:   3'- -AGUAGGGGUGCuaGUUGca-GUGGccu -5'
5565 3' -53.8 NC_001806.1 + 52257 0.68 0.904243
Target:  5'- aUCGUCCaucaCCACGcccaguauaucAUCAACGcgacccUCACCGGGu -3'
miRNA:   3'- -AGUAGG----GGUGC-----------UAGUUGC------AGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 50501 0.68 0.922003
Target:  5'- ---gCCCCGCGGUCGugGggGCCGa- -3'
miRNA:   3'- aguaGGGGUGCUAGUugCagUGGCcu -5'
5565 3' -53.8 NC_001806.1 + 79456 0.68 0.916322
Target:  5'- cCGUCCCCACGuccCAGUGUgCACCGcGGc -3'
miRNA:   3'- aGUAGGGGUGCua-GUUGCA-GUGGC-CU- -5'
5565 3' -53.8 NC_001806.1 + 53882 0.69 0.877279
Target:  5'- gCAgCCgCGCGGggaUCAGgGUCGCCGGGg -3'
miRNA:   3'- aGUaGGgGUGCU---AGUUgCAGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 21262 0.69 0.877279
Target:  5'- cCAcCCCCACGAccUCGACGaCGcCCGGc -3'
miRNA:   3'- aGUaGGGGUGCU--AGUUGCaGU-GGCCu -5'
5565 3' -53.8 NC_001806.1 + 116305 0.69 0.869975
Target:  5'- --uUCCCCGCGGUCA---UCACcCGGGu -3'
miRNA:   3'- aguAGGGGUGCUAGUugcAGUG-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.