Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5565 | 3' | -53.8 | NC_001806.1 | + | 130718 | 1.01 | 0.017486 |
Target: 5'- gUCAUCCCCACGAUCAACGUC-CCGGAg -3' miRNA: 3'- -AGUAGGGGUGCUAGUUGCAGuGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 10992 | 0.78 | 0.422234 |
Target: 5'- aCcgCCCCGCGAUCcAUGUC-CCGGGg -3' miRNA: 3'- aGuaGGGGUGCUAGuUGCAGuGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 60581 | 0.77 | 0.496421 |
Target: 5'- ---cCCCCugGAUCcccggGACGUUACCGGGg -3' miRNA: 3'- aguaGGGGugCUAG-----UUGCAGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 60256 | 0.75 | 0.565791 |
Target: 5'- aCAUUCCCACGAUCAACuGUCGCg--- -3' miRNA: 3'- aGUAGGGGUGCUAGUUG-CAGUGgccu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 55173 | 0.75 | 0.575935 |
Target: 5'- aCAUUCCCugGGUCGcggGCGUCACCu-- -3' miRNA: 3'- aGUAGGGGugCUAGU---UGCAGUGGccu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 43488 | 0.75 | 0.606584 |
Target: 5'- ---cCCCCACGAUCGACGggGCCGuGGc -3' miRNA: 3'- aguaGGGGUGCUAGUUGCagUGGC-CU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 86058 | 0.74 | 0.616848 |
Target: 5'- cUCGUCCCCugGGgcggCGGCGUCuagcuCgCGGAg -3' miRNA: 3'- -AGUAGGGGugCUa---GUUGCAGu----G-GCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 56269 | 0.74 | 0.616848 |
Target: 5'- cCGUCCCCGgGGUCcuuccugugcaGGCGaCGCCGGAg -3' miRNA: 3'- aGUAGGGGUgCUAG-----------UUGCaGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 68525 | 0.73 | 0.678397 |
Target: 5'- cCAUCCUCGCGGUCAccggcuccgacACGUCccaugcGCUGGAu -3' miRNA: 3'- aGUAGGGGUGCUAGU-----------UGCAG------UGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 107370 | 0.72 | 0.738552 |
Target: 5'- gCGUCCCCucgGCGGUgCAGCGggaacgcgccCGCCGGAg -3' miRNA: 3'- aGUAGGGG---UGCUA-GUUGCa---------GUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 139806 | 0.71 | 0.821849 |
Target: 5'- gCA-CCCgCGCGAUCAugGUacgggGCCGGGa -3' miRNA: 3'- aGUaGGG-GUGCUAGUugCAg----UGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 69424 | 0.7 | 0.846796 |
Target: 5'- gCGUCCCCGCGcg-GACGccCACCGGc -3' miRNA: 3'- aGUAGGGGUGCuagUUGCa-GUGGCCu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 91901 | 0.7 | 0.854728 |
Target: 5'- -gGUCCCCACGGcCAugGggcgGCUGGAg -3' miRNA: 3'- agUAGGGGUGCUaGUugCag--UGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 135063 | 0.7 | 0.854728 |
Target: 5'- cCggCCCCGCGGg-GACG-CGCCGGGc -3' miRNA: 3'- aGuaGGGGUGCUagUUGCaGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 116305 | 0.69 | 0.869975 |
Target: 5'- --uUCCCCGCGGUCA---UCACcCGGGu -3' miRNA: 3'- aguAGGGGUGCUAGUugcAGUG-GCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 21262 | 0.69 | 0.877279 |
Target: 5'- cCAcCCCCACGAccUCGACGaCGcCCGGc -3' miRNA: 3'- aGUaGGGGUGCU--AGUUGCaGU-GGCCu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 53882 | 0.69 | 0.877279 |
Target: 5'- gCAgCCgCGCGGggaUCAGgGUCGCCGGGg -3' miRNA: 3'- aGUaGGgGUGCU---AGUUgCAGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 52257 | 0.68 | 0.904243 |
Target: 5'- aUCGUCCaucaCCACGcccaguauaucAUCAACGcgacccUCACCGGGu -3' miRNA: 3'- -AGUAGG----GGUGC-----------UAGUUGC------AGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 117954 | 0.68 | 0.916322 |
Target: 5'- aCcgCCCgACGA-CAGCGaCGCCGGu -3' miRNA: 3'- aGuaGGGgUGCUaGUUGCaGUGGCCu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 79456 | 0.68 | 0.916322 |
Target: 5'- cCGUCCCCACGuccCAGUGUgCACCGcGGc -3' miRNA: 3'- aGUAGGGGUGCua-GUUGCA-GUGGC-CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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