miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 3' -53.8 NC_001806.1 + 130718 1.01 0.017486
Target:  5'- gUCAUCCCCACGAUCAACGUC-CCGGAg -3'
miRNA:   3'- -AGUAGGGGUGCUAGUUGCAGuGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 10992 0.78 0.422234
Target:  5'- aCcgCCCCGCGAUCcAUGUC-CCGGGg -3'
miRNA:   3'- aGuaGGGGUGCUAGuUGCAGuGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 60581 0.77 0.496421
Target:  5'- ---cCCCCugGAUCcccggGACGUUACCGGGg -3'
miRNA:   3'- aguaGGGGugCUAG-----UUGCAGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 60256 0.75 0.565791
Target:  5'- aCAUUCCCACGAUCAACuGUCGCg--- -3'
miRNA:   3'- aGUAGGGGUGCUAGUUG-CAGUGgccu -5'
5565 3' -53.8 NC_001806.1 + 55173 0.75 0.575935
Target:  5'- aCAUUCCCugGGUCGcggGCGUCACCu-- -3'
miRNA:   3'- aGUAGGGGugCUAGU---UGCAGUGGccu -5'
5565 3' -53.8 NC_001806.1 + 43488 0.75 0.606584
Target:  5'- ---cCCCCACGAUCGACGggGCCGuGGc -3'
miRNA:   3'- aguaGGGGUGCUAGUUGCagUGGC-CU- -5'
5565 3' -53.8 NC_001806.1 + 86058 0.74 0.616848
Target:  5'- cUCGUCCCCugGGgcggCGGCGUCuagcuCgCGGAg -3'
miRNA:   3'- -AGUAGGGGugCUa---GUUGCAGu----G-GCCU- -5'
5565 3' -53.8 NC_001806.1 + 56269 0.74 0.616848
Target:  5'- cCGUCCCCGgGGUCcuuccugugcaGGCGaCGCCGGAg -3'
miRNA:   3'- aGUAGGGGUgCUAG-----------UUGCaGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 68525 0.73 0.678397
Target:  5'- cCAUCCUCGCGGUCAccggcuccgacACGUCccaugcGCUGGAu -3'
miRNA:   3'- aGUAGGGGUGCUAGU-----------UGCAG------UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 107370 0.72 0.738552
Target:  5'- gCGUCCCCucgGCGGUgCAGCGggaacgcgccCGCCGGAg -3'
miRNA:   3'- aGUAGGGG---UGCUA-GUUGCa---------GUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 139806 0.71 0.821849
Target:  5'- gCA-CCCgCGCGAUCAugGUacgggGCCGGGa -3'
miRNA:   3'- aGUaGGG-GUGCUAGUugCAg----UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 69424 0.7 0.846796
Target:  5'- gCGUCCCCGCGcg-GACGccCACCGGc -3'
miRNA:   3'- aGUAGGGGUGCuagUUGCa-GUGGCCu -5'
5565 3' -53.8 NC_001806.1 + 91901 0.7 0.854728
Target:  5'- -gGUCCCCACGGcCAugGggcgGCUGGAg -3'
miRNA:   3'- agUAGGGGUGCUaGUugCag--UGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 135063 0.7 0.854728
Target:  5'- cCggCCCCGCGGg-GACG-CGCCGGGc -3'
miRNA:   3'- aGuaGGGGUGCUagUUGCaGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 116305 0.69 0.869975
Target:  5'- --uUCCCCGCGGUCA---UCACcCGGGu -3'
miRNA:   3'- aguAGGGGUGCUAGUugcAGUG-GCCU- -5'
5565 3' -53.8 NC_001806.1 + 21262 0.69 0.877279
Target:  5'- cCAcCCCCACGAccUCGACGaCGcCCGGc -3'
miRNA:   3'- aGUaGGGGUGCU--AGUUGCaGU-GGCCu -5'
5565 3' -53.8 NC_001806.1 + 53882 0.69 0.877279
Target:  5'- gCAgCCgCGCGGggaUCAGgGUCGCCGGGg -3'
miRNA:   3'- aGUaGGgGUGCU---AGUUgCAGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 52257 0.68 0.904243
Target:  5'- aUCGUCCaucaCCACGcccaguauaucAUCAACGcgacccUCACCGGGu -3'
miRNA:   3'- -AGUAGG----GGUGC-----------UAGUUGC------AGUGGCCU- -5'
5565 3' -53.8 NC_001806.1 + 117954 0.68 0.916322
Target:  5'- aCcgCCCgACGA-CAGCGaCGCCGGu -3'
miRNA:   3'- aGuaGGGgUGCUaGUUGCaGUGGCCu -5'
5565 3' -53.8 NC_001806.1 + 79456 0.68 0.916322
Target:  5'- cCGUCCCCACGuccCAGUGUgCACCGcGGc -3'
miRNA:   3'- aGUAGGGGUGCua-GUUGCA-GUGGC-CU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.