Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5565 | 3' | -53.8 | NC_001806.1 | + | 5350 | 0.66 | 0.968856 |
Target: 5'- uUCGUCC--GCGuAUCGGCGUC-CCGGc -3' miRNA: 3'- -AGUAGGggUGC-UAGUUGCAGuGGCCu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 7573 | 0.67 | 0.946796 |
Target: 5'- -gAUCCacaCCGCGGUUcGCGUCccgcccACCGGAa -3' miRNA: 3'- agUAGG---GGUGCUAGuUGCAG------UGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 10992 | 0.78 | 0.422234 |
Target: 5'- aCcgCCCCGCGAUCcAUGUC-CCGGGg -3' miRNA: 3'- aGuaGGGGUGCUAGuUGCAGuGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 12804 | 0.66 | 0.968856 |
Target: 5'- aUCAggCCCAUGuuguUCGGgGUgGCCGGGg -3' miRNA: 3'- -AGUagGGGUGCu---AGUUgCAgUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 16575 | 0.66 | 0.962393 |
Target: 5'- cUCAUCCCgGCugcGUCGuCGUaUACCGGGg -3' miRNA: 3'- -AGUAGGGgUGc--UAGUuGCA-GUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 20373 | 0.67 | 0.946796 |
Target: 5'- cCGUCCCguUGGUCccGGCGUCcggcgggcgggACCGGGg -3' miRNA: 3'- aGUAGGGguGCUAG--UUGCAG-----------UGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 21262 | 0.69 | 0.877279 |
Target: 5'- cCAcCCCCACGAccUCGACGaCGcCCGGc -3' miRNA: 3'- aGUaGGGGUGCU--AGUUGCaGU-GGCCu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 22299 | 0.66 | 0.968856 |
Target: 5'- -gGUCCCCGgGGaCGugG-CGCUGGAc -3' miRNA: 3'- agUAGGGGUgCUaGUugCaGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 43488 | 0.75 | 0.606584 |
Target: 5'- ---cCCCCACGAUCGACGggGCCGuGGc -3' miRNA: 3'- aguaGGGGUGCUAGUUGCagUGGC-CU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 46064 | 0.66 | 0.958835 |
Target: 5'- -gGUCCCC-CGGacgCGGCGUCccguuuCCGGGg -3' miRNA: 3'- agUAGGGGuGCUa--GUUGCAGu-----GGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 50501 | 0.68 | 0.922003 |
Target: 5'- ---gCCCCGCGGUCGugGggGCCGa- -3' miRNA: 3'- aguaGGGGUGCUAGUugCagUGGCcu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 52257 | 0.68 | 0.904243 |
Target: 5'- aUCGUCCaucaCCACGcccaguauaucAUCAACGcgacccUCACCGGGu -3' miRNA: 3'- -AGUAGG----GGUGC-----------UAGUUGC------AGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 53882 | 0.69 | 0.877279 |
Target: 5'- gCAgCCgCGCGGggaUCAGgGUCGCCGGGg -3' miRNA: 3'- aGUaGGgGUGCU---AGUUgCAGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 55173 | 0.75 | 0.575935 |
Target: 5'- aCAUUCCCugGGUCGcggGCGUCACCu-- -3' miRNA: 3'- aGUAGGGGugCUAGU---UGCAGUGGccu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 56269 | 0.74 | 0.616848 |
Target: 5'- cCGUCCCCGgGGUCcuuccugugcaGGCGaCGCCGGAg -3' miRNA: 3'- aGUAGGGGUgCUAG-----------UUGCaGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 58235 | 0.66 | 0.965732 |
Target: 5'- ---cCCCCGcCGAcCuGCaGUCGCCGGAg -3' miRNA: 3'- aguaGGGGU-GCUaGuUG-CAGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 60256 | 0.75 | 0.565791 |
Target: 5'- aCAUUCCCACGAUCAACuGUCGCg--- -3' miRNA: 3'- aGUAGGGGUGCUAGUUG-CAGUGgccu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 60581 | 0.77 | 0.496421 |
Target: 5'- ---cCCCCugGAUCcccggGACGUUACCGGGg -3' miRNA: 3'- aguaGGGGugCUAG-----UUGCAGUGGCCU- -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 68048 | 0.66 | 0.962393 |
Target: 5'- gUCAUUCCCGCccGGUCu-CGUCGuuGGu -3' miRNA: 3'- -AGUAGGGGUG--CUAGuuGCAGUggCCu -5' |
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5565 | 3' | -53.8 | NC_001806.1 | + | 68525 | 0.73 | 0.678397 |
Target: 5'- cCAUCCUCGCGGUCAccggcuccgacACGUCccaugcGCUGGAu -3' miRNA: 3'- aGUAGGGGUGCUAGU-----------UGCAG------UGGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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