miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5565 5' -60.8 NC_001806.1 + 305 0.71 0.371906
Target:  5'- cGGCCCcGCCCCCCacGCCCgccGCGc-- -3'
miRNA:   3'- -CCGGGaCGGGGGG--UGGGacuUGCauu -5'
5565 5' -60.8 NC_001806.1 + 5522 0.73 0.312129
Target:  5'- cGGCCCcccGCCCCCCcggcgggcccACCCcGAACGg-- -3'
miRNA:   3'- -CCGGGa--CGGGGGG----------UGGGaCUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 11119 0.68 0.551154
Target:  5'- gGGCCCU-CUCCCCGgcuUCCUGAACu--- -3'
miRNA:   3'- -CCGGGAcGGGGGGU---GGGACUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 20296 0.67 0.624542
Target:  5'- cGGCCCcGCCCCCUuggggcggucccGCCCgccggccaauggggGGGCGg-- -3'
miRNA:   3'- -CCGGGaCGGGGGG------------UGGGa-------------CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 20482 0.72 0.341072
Target:  5'- gGGCCCcGCCCCCUGCCCguuccuCGUu- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGGGacuu--GCAuu -5'
5565 5' -60.8 NC_001806.1 + 20586 0.66 0.660521
Target:  5'- cGCCCUcGCgCCCCGCCCaUGGcagauggcGCGg-- -3'
miRNA:   3'- cCGGGA-CGgGGGGUGGG-ACU--------UGCauu -5'
5565 5' -60.8 NC_001806.1 + 22057 0.72 0.326363
Target:  5'- uGGCCCggcgccgGgCCCCCGCCCccgGGGCGg-- -3'
miRNA:   3'- -CCGGGa------CgGGGGGUGGGa--CUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 22900 0.69 0.522088
Target:  5'- cGGCCCgccaGCCCCCCGCggCCgGAGgGa-- -3'
miRNA:   3'- -CCGGGa---CGGGGGGUG--GGaCUUgCauu -5'
5565 5' -60.8 NC_001806.1 + 23306 0.67 0.59062
Target:  5'- cGGCCCgGCCCggCCGCCCgGAGgCGg-- -3'
miRNA:   3'- -CCGGGaCGGGg-GGUGGGaCUU-GCauu -5'
5565 5' -60.8 NC_001806.1 + 23517 0.73 0.312129
Target:  5'- cGGCCCgccgaggGCCCCgaCC-CCCUGGGCGg-- -3'
miRNA:   3'- -CCGGGa------CGGGG--GGuGGGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 23730 0.71 0.404585
Target:  5'- gGGCCC-GCCCCcgCCGCCCaGGccGCGUGc -3'
miRNA:   3'- -CCGGGaCGGGG--GGUGGGaCU--UGCAUu -5'
5565 5' -60.8 NC_001806.1 + 24513 0.67 0.600574
Target:  5'- gGGCCgUGCUgCCgGCgCUGGACGg-- -3'
miRNA:   3'- -CCGGgACGGgGGgUGgGACUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 24804 0.68 0.531715
Target:  5'- gGGCCCUGCCgCCggcgCCGCCCgGGAUu--- -3'
miRNA:   3'- -CCGGGACGG-GG----GGUGGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 26265 0.66 0.67048
Target:  5'- aGCCCggGCCCCCCgcgGCCgaGAcuaGCGa-- -3'
miRNA:   3'- cCGGGa-CGGGGGG---UGGgaCU---UGCauu -5'
5565 5' -60.8 NC_001806.1 + 26621 0.69 0.475065
Target:  5'- uGGCCggacaGCCCCCCGCCC-GAGCc--- -3'
miRNA:   3'- -CCGGga---CGGGGGGUGGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 26681 0.73 0.291671
Target:  5'- cGGCCCcgGCCCCcaCCGCCCg--GCGUGGg -3'
miRNA:   3'- -CCGGGa-CGGGG--GGUGGGacuUGCAUU- -5'
5565 5' -60.8 NC_001806.1 + 27064 0.69 0.512529
Target:  5'- gGGCCCgagGCCCgugCCCggGCCCUGGcccGCGg-- -3'
miRNA:   3'- -CCGGGa--CGGG---GGG--UGGGACU---UGCauu -5'
5565 5' -60.8 NC_001806.1 + 29549 0.75 0.225629
Target:  5'- gGGCCCUgucGCCCaCCCACCCgGAGCc--- -3'
miRNA:   3'- -CCGGGA---CGGG-GGGUGGGaCUUGcauu -5'
5565 5' -60.8 NC_001806.1 + 29760 0.69 0.493635
Target:  5'- cGCCC-GCCCCCCGCC--GGACGc-- -3'
miRNA:   3'- cCGGGaCGGGGGGUGGgaCUUGCauu -5'
5565 5' -60.8 NC_001806.1 + 30165 0.75 0.225629
Target:  5'- aGGCUCcGCCCCCCGCCCcGGGCc--- -3'
miRNA:   3'- -CCGGGaCGGGGGGUGGGaCUUGcauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.