Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5565 | 5' | -60.8 | NC_001806.1 | + | 142062 | 0.67 | 0.630543 |
Target: 5'- cGGCCgguucGCCCCCCgaACCC-GGACGg-- -3' miRNA: 3'- -CCGGga---CGGGGGG--UGGGaCUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 124911 | 0.67 | 0.630543 |
Target: 5'- uGGCCCUGCUCgCCUAUCgCU--GCGUGc -3' miRNA: 3'- -CCGGGACGGG-GGGUGG-GAcuUGCAUu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 20296 | 0.67 | 0.624542 |
Target: 5'- cGGCCCcGCCCCCUuggggcggucccGCCCgccggccaauggggGGGCGg-- -3' miRNA: 3'- -CCGGGaCGGGGGG------------UGGGa-------------CUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 144594 | 0.67 | 0.620543 |
Target: 5'- cGGCUCUccggGCCCCCCugCagccgGGGCGg-- -3' miRNA: 3'- -CCGGGA----CGGGGGGugGga---CUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 144303 | 0.67 | 0.600574 |
Target: 5'- cGGCCCgcgacaccccCCCCCCGCCCgUGuGgGUAu -3' miRNA: 3'- -CCGGGac--------GGGGGGUGGG-ACuUgCAUu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 24513 | 0.67 | 0.600574 |
Target: 5'- gGGCCgUGCUgCCgGCgCUGGACGg-- -3' miRNA: 3'- -CCGGgACGGgGGgUGgGACUUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 87416 | 0.67 | 0.594599 |
Target: 5'- gGGCgCCUcCCCCCCGgcgccccuaaaucgcCCCUGggUGUc- -3' miRNA: 3'- -CCG-GGAcGGGGGGU---------------GGGACuuGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 96518 | 0.67 | 0.59062 |
Target: 5'- gGGCCCUGCCaCUCCGgcgccgcccgcCCCUG-GCGc-- -3' miRNA: 3'- -CCGGGACGG-GGGGU-----------GGGACuUGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 149126 | 0.67 | 0.59062 |
Target: 5'- aGUCCUGCCCCCCugCUggccuCGg-- -3' miRNA: 3'- cCGGGACGGGGGGugGGacuu-GCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 50484 | 0.67 | 0.59062 |
Target: 5'- cGCCCUGCCCCUgggaaGCCCcgcGGuCGUGGg -3' miRNA: 3'- cCGGGACGGGGGg----UGGGa--CUuGCAUU- -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 23306 | 0.67 | 0.59062 |
Target: 5'- cGGCCCgGCCCggCCGCCCgGAGgCGg-- -3' miRNA: 3'- -CCGGGaCGGGg-GGUGGGaCUU-GCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 60971 | 0.67 | 0.59062 |
Target: 5'- cGGaCCCagGcCCCCCCACCCgcguucuacaaGGACGUc- -3' miRNA: 3'- -CC-GGGa-C-GGGGGGUGGGa----------CUUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 134998 | 0.67 | 0.59062 |
Target: 5'- uGCCCgaUG-CCCCCGCCCUGGuccgGCGc-- -3' miRNA: 3'- cCGGG--ACgGGGGGUGGGACU----UGCauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 66750 | 0.68 | 0.580695 |
Target: 5'- cGCCCggGCCCCCCAgCCCcagcucGGCGUc- -3' miRNA: 3'- cCGGGa-CGGGGGGU-GGGac----UUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 120825 | 0.68 | 0.580695 |
Target: 5'- uGCCCU-CCCCCCGCCCccGGCa--- -3' miRNA: 3'- cCGGGAcGGGGGGUGGGacUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 49605 | 0.68 | 0.560956 |
Target: 5'- gGGCCC-GUUCCCCGCCCaaggUGGAgGUu- -3' miRNA: 3'- -CCGGGaCGGGGGGUGGG----ACUUgCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 11119 | 0.68 | 0.551154 |
Target: 5'- gGGCCCU-CUCCCCGgcuUCCUGAACu--- -3' miRNA: 3'- -CCGGGAcGGGGGGU---GGGACUUGcauu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 115219 | 0.68 | 0.541406 |
Target: 5'- cGGCCCUGCaaCCCCCggggacgcgccGCCggGGGCGUu- -3' miRNA: 3'- -CCGGGACG--GGGGG-----------UGGgaCUUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 90896 | 0.68 | 0.541406 |
Target: 5'- uGGCCCgcgcgGCCgCCCACCU--GGCGUu- -3' miRNA: 3'- -CCGGGa----CGGgGGGUGGGacUUGCAuu -5' |
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5565 | 5' | -60.8 | NC_001806.1 | + | 51366 | 0.68 | 0.541406 |
Target: 5'- cGGCgggugUCUGCUCCCCACCCcGGAgGg-- -3' miRNA: 3'- -CCG-----GGACGGGGGGUGGGaCUUgCauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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