miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5566 3' -62.2 NC_001806.1 + 30220 0.66 0.672654
Target:  5'- cGCCCCCg-CGcGGcCGUGGCCcCGUGc -3'
miRNA:   3'- -UGGGGGgaGCcCCuGCACUGGuGCAC- -5'
5566 3' -62.2 NC_001806.1 + 83242 0.66 0.662962
Target:  5'- -gCCCCCUCaagggcccgcggGGGGGCG-GGCgACGg- -3'
miRNA:   3'- ugGGGGGAG------------CCCCUGCaCUGgUGCac -5'
5566 3' -62.2 NC_001806.1 + 39822 0.66 0.662962
Target:  5'- aGCCCCCgUUGGGGGgGUG-CguCGg- -3'
miRNA:   3'- -UGGGGGgAGCCCCUgCACuGguGCac -5'
5566 3' -62.2 NC_001806.1 + 131018 0.66 0.653248
Target:  5'- gUCCCCCgcgCGGGuccguuagcgaGACG-GACCACGc- -3'
miRNA:   3'- uGGGGGGa--GCCC-----------CUGCaCUGGUGCac -5'
5566 3' -62.2 NC_001806.1 + 112131 0.67 0.624044
Target:  5'- gGCCgUCCUCGGGG-CGUuuGAgCGCGg- -3'
miRNA:   3'- -UGGgGGGAGCCCCuGCA--CUgGUGCac -5'
5566 3' -62.2 NC_001806.1 + 84420 0.67 0.624044
Target:  5'- gACCCCgagacgcagCC-CGGGGACGggGGCCGguuUGUGa -3'
miRNA:   3'- -UGGGG---------GGaGCCCCUGCa-CUGGU---GCAC- -5'
5566 3' -62.2 NC_001806.1 + 37644 0.67 0.624044
Target:  5'- uGCCCCCCaaaGGGGuCGUgcauGACC-UGUGc -3'
miRNA:   3'- -UGGGGGGag-CCCCuGCA----CUGGuGCAC- -5'
5566 3' -62.2 NC_001806.1 + 27783 0.67 0.614311
Target:  5'- gGCCCCCaaaUCGGGGGcCG-GGCCGUGc- -3'
miRNA:   3'- -UGGGGGg--AGCCCCU-GCaCUGGUGCac -5'
5566 3' -62.2 NC_001806.1 + 3534 0.67 0.614311
Target:  5'- cGCCCCCCgcgGGGGAgGcGGgCGCGg- -3'
miRNA:   3'- -UGGGGGGag-CCCCUgCaCUgGUGCac -5'
5566 3' -62.2 NC_001806.1 + 30171 0.67 0.594888
Target:  5'- cGCCCCCCgcccCGGGccccccGCGUccgcGGCCGCGUc -3'
miRNA:   3'- -UGGGGGGa---GCCCc-----UGCA----CUGGUGCAc -5'
5566 3' -62.2 NC_001806.1 + 27237 0.67 0.591982
Target:  5'- cGCCCUcacagggcgggccgCCUCGGGGGCGggacUGGCCAauCGg- -3'
miRNA:   3'- -UGGGG--------------GGAGCCCCUGC----ACUGGU--GCac -5'
5566 3' -62.2 NC_001806.1 + 17665 0.67 0.591982
Target:  5'- aGCCCCCCUCGccucuaccacuuguGGGugGUaGgCGCGg- -3'
miRNA:   3'- -UGGGGGGAGC--------------CCCugCAcUgGUGCac -5'
5566 3' -62.2 NC_001806.1 + 151538 0.67 0.585211
Target:  5'- cGCCCgugggCCCgggcggcCGGGGGCGgcgggGGCCGCGaUGg -3'
miRNA:   3'- -UGGG-----GGGa------GCCCCUGCa----CUGGUGC-AC- -5'
5566 3' -62.2 NC_001806.1 + 144782 0.67 0.585211
Target:  5'- -gUCCCCUCacGGGGCGaaGGCCGCGUa -3'
miRNA:   3'- ugGGGGGAGc-CCCUGCa-CUGGUGCAc -5'
5566 3' -62.2 NC_001806.1 + 29871 0.67 0.585211
Target:  5'- cGCCCCCCUCGGcGcccauCG-GGCCACa-- -3'
miRNA:   3'- -UGGGGGGAGCCcCu----GCaCUGGUGcac -5'
5566 3' -62.2 NC_001806.1 + 20720 0.67 0.575564
Target:  5'- gGCCCgCCggGGGGGCGgggGGCCGgCGg- -3'
miRNA:   3'- -UGGGgGGagCCCCUGCa--CUGGU-GCac -5'
5566 3' -62.2 NC_001806.1 + 101099 0.68 0.565954
Target:  5'- aGCCCcacaaaaaacggCCCgCGGGGGuCGUcGACCACGg- -3'
miRNA:   3'- -UGGG------------GGGaGCCCCU-GCA-CUGGUGCac -5'
5566 3' -62.2 NC_001806.1 + 5579 0.68 0.537396
Target:  5'- cGCCCCgacgCCggcacgcCGGGGGCccGUGGCCGCGg- -3'
miRNA:   3'- -UGGGG----GGa------GCCCCUG--CACUGGUGCac -5'
5566 3' -62.2 NC_001806.1 + 54714 0.68 0.537396
Target:  5'- -aCgCCCUCGGGGACGcaGCCGgcCGUGc -3'
miRNA:   3'- ugGgGGGAGCCCCUGCacUGGU--GCAC- -5'
5566 3' -62.2 NC_001806.1 + 64121 0.69 0.500139
Target:  5'- gACCCCUCUCgccccaGGGcGAUGUGGCgcaugccgCGCGUGg -3'
miRNA:   3'- -UGGGGGGAG------CCC-CUGCACUG--------GUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.