Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5566 | 3' | -62.2 | NC_001806.1 | + | 30220 | 0.66 | 0.672654 |
Target: 5'- cGCCCCCg-CGcGGcCGUGGCCcCGUGc -3' miRNA: 3'- -UGGGGGgaGCcCCuGCACUGGuGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 83242 | 0.66 | 0.662962 |
Target: 5'- -gCCCCCUCaagggcccgcggGGGGGCG-GGCgACGg- -3' miRNA: 3'- ugGGGGGAG------------CCCCUGCaCUGgUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 39822 | 0.66 | 0.662962 |
Target: 5'- aGCCCCCgUUGGGGGgGUG-CguCGg- -3' miRNA: 3'- -UGGGGGgAGCCCCUgCACuGguGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 131018 | 0.66 | 0.653248 |
Target: 5'- gUCCCCCgcgCGGGuccguuagcgaGACG-GACCACGc- -3' miRNA: 3'- uGGGGGGa--GCCC-----------CUGCaCUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 112131 | 0.67 | 0.624044 |
Target: 5'- gGCCgUCCUCGGGG-CGUuuGAgCGCGg- -3' miRNA: 3'- -UGGgGGGAGCCCCuGCA--CUgGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 84420 | 0.67 | 0.624044 |
Target: 5'- gACCCCgagacgcagCC-CGGGGACGggGGCCGguuUGUGa -3' miRNA: 3'- -UGGGG---------GGaGCCCCUGCa-CUGGU---GCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 37644 | 0.67 | 0.624044 |
Target: 5'- uGCCCCCCaaaGGGGuCGUgcauGACC-UGUGc -3' miRNA: 3'- -UGGGGGGag-CCCCuGCA----CUGGuGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 3534 | 0.67 | 0.614311 |
Target: 5'- cGCCCCCCgcgGGGGAgGcGGgCGCGg- -3' miRNA: 3'- -UGGGGGGag-CCCCUgCaCUgGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 27783 | 0.67 | 0.614311 |
Target: 5'- gGCCCCCaaaUCGGGGGcCG-GGCCGUGc- -3' miRNA: 3'- -UGGGGGg--AGCCCCU-GCaCUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 30171 | 0.67 | 0.594888 |
Target: 5'- cGCCCCCCgcccCGGGccccccGCGUccgcGGCCGCGUc -3' miRNA: 3'- -UGGGGGGa---GCCCc-----UGCA----CUGGUGCAc -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 27237 | 0.67 | 0.591982 |
Target: 5'- cGCCCUcacagggcgggccgCCUCGGGGGCGggacUGGCCAauCGg- -3' miRNA: 3'- -UGGGG--------------GGAGCCCCUGC----ACUGGU--GCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 17665 | 0.67 | 0.591982 |
Target: 5'- aGCCCCCCUCGccucuaccacuuguGGGugGUaGgCGCGg- -3' miRNA: 3'- -UGGGGGGAGC--------------CCCugCAcUgGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 151538 | 0.67 | 0.585211 |
Target: 5'- cGCCCgugggCCCgggcggcCGGGGGCGgcgggGGCCGCGaUGg -3' miRNA: 3'- -UGGG-----GGGa------GCCCCUGCa----CUGGUGC-AC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 144782 | 0.67 | 0.585211 |
Target: 5'- -gUCCCCUCacGGGGCGaaGGCCGCGUa -3' miRNA: 3'- ugGGGGGAGc-CCCUGCa-CUGGUGCAc -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 29871 | 0.67 | 0.585211 |
Target: 5'- cGCCCCCCUCGGcGcccauCG-GGCCACa-- -3' miRNA: 3'- -UGGGGGGAGCCcCu----GCaCUGGUGcac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 20720 | 0.67 | 0.575564 |
Target: 5'- gGCCCgCCggGGGGGCGgggGGCCGgCGg- -3' miRNA: 3'- -UGGGgGGagCCCCUGCa--CUGGU-GCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 101099 | 0.68 | 0.565954 |
Target: 5'- aGCCCcacaaaaaacggCCCgCGGGGGuCGUcGACCACGg- -3' miRNA: 3'- -UGGG------------GGGaGCCCCU-GCA-CUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 5579 | 0.68 | 0.537396 |
Target: 5'- cGCCCCgacgCCggcacgcCGGGGGCccGUGGCCGCGg- -3' miRNA: 3'- -UGGGG----GGa------GCCCCUG--CACUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 54714 | 0.68 | 0.537396 |
Target: 5'- -aCgCCCUCGGGGACGcaGCCGgcCGUGc -3' miRNA: 3'- ugGgGGGAGCCCCUGCacUGGU--GCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 88948 | 0.69 | 0.500139 |
Target: 5'- aACCCCgC-CGGGG-CGUGGuCCACGc- -3' miRNA: 3'- -UGGGGgGaGCCCCuGCACU-GGUGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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