Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5566 | 3' | -62.2 | NC_001806.1 | + | 30220 | 0.66 | 0.672654 |
Target: 5'- cGCCCCCg-CGcGGcCGUGGCCcCGUGc -3' miRNA: 3'- -UGGGGGgaGCcCCuGCACUGGuGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 57902 | 0.7 | 0.412655 |
Target: 5'- cGCCCCCgCUUGGucguGGGaGUGACCcGCGUGg -3' miRNA: 3'- -UGGGGG-GAGCC----CCUgCACUGG-UGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 89039 | 0.7 | 0.42098 |
Target: 5'- cCCCCCCgcaguacaccUUGGGGGCGcgcuugaggUGACCGuCGUGc -3' miRNA: 3'- uGGGGGG----------AGCCCCUGC---------ACUGGU-GCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 72490 | 0.7 | 0.446551 |
Target: 5'- cACCCCCUgCGGGG-CGaGAUCGCGg- -3' miRNA: 3'- -UGGGGGGaGCCCCuGCaCUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 5947 | 0.69 | 0.455265 |
Target: 5'- gACCgCCCCaaGGGGGCGgGGCCGCc-- -3' miRNA: 3'- -UGG-GGGGagCCCCUGCaCUGGUGcac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 22288 | 0.69 | 0.455265 |
Target: 5'- aACCCgcgcgugguCCC-CGGGGACGUGGCgCugGa- -3' miRNA: 3'- -UGGG---------GGGaGCCCCUGCACUG-GugCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 64121 | 0.69 | 0.500139 |
Target: 5'- gACCCCUCUCgccccaGGGcGAUGUGGCgcaugccgCGCGUGg -3' miRNA: 3'- -UGGGGGGAG------CCC-CUGCACUG--------GUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 88948 | 0.69 | 0.500139 |
Target: 5'- aACCCCgC-CGGGG-CGUGGuCCACGc- -3' miRNA: 3'- -UGGGGgGaGCCCCuGCACU-GGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 5579 | 0.68 | 0.537396 |
Target: 5'- cGCCCCgacgCCggcacgcCGGGGGCccGUGGCCGCGg- -3' miRNA: 3'- -UGGGG----GGa------GCCCCUG--CACUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 110107 | 0.71 | 0.388301 |
Target: 5'- gGCCCCCUaCGGuGGAUGUGG--GCGUGg -3' miRNA: 3'- -UGGGGGGaGCC-CCUGCACUggUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 108731 | 0.71 | 0.388301 |
Target: 5'- cACCCCCC-CGGGGACGgcgaGACguuGCGa- -3' miRNA: 3'- -UGGGGGGaGCCCCUGCa---CUGg--UGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 29192 | 0.71 | 0.383545 |
Target: 5'- cCCCCCCUCGaGaGGACGgggggagcgacgagGGCgACGUGu -3' miRNA: 3'- uGGGGGGAGC-C-CCUGCa-------------CUGgUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 1326 | 0.74 | 0.263025 |
Target: 5'- aACUUCCCgccgCGGGGGCGUGGCCAa--- -3' miRNA: 3'- -UGGGGGGa---GCCCCUGCACUGGUgcac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 69119 | 0.73 | 0.281385 |
Target: 5'- uGCgCCCC-CGGGGACGcuaaUGGCgCGCGUGc -3' miRNA: 3'- -UGgGGGGaGCCCCUGC----ACUG-GUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 4173 | 0.73 | 0.303404 |
Target: 5'- cACCCgCCC-CGGGGGCGggggcccggcgccgGGCCACGg- -3' miRNA: 3'- -UGGG-GGGaGCCCCUGCa-------------CUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 147039 | 0.72 | 0.321121 |
Target: 5'- gGCCgCCCgCGGGGACGgccccgGAagucuCCGCGUGg -3' miRNA: 3'- -UGGgGGGaGCCCCUGCa-----CU-----GGUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 119604 | 0.72 | 0.335268 |
Target: 5'- aGCCCCCCggCGGGGGCcgcuuuGUGGCCccaGCGc- -3' miRNA: 3'- -UGGGGGGa-GCCCCUG------CACUGG---UGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 30621 | 0.71 | 0.355081 |
Target: 5'- cCCCCCCUCcgacucagggccggGGGGGCGcGGCCAgGgUGg -3' miRNA: 3'- uGGGGGGAG--------------CCCCUGCaCUGGUgC-AC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 69982 | 0.71 | 0.357332 |
Target: 5'- gGCCCUgguggUCGGGGACGcgcugagGGCCACGUGu -3' miRNA: 3'- -UGGGGgg---AGCCCCUGCa------CUGGUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 106484 | 0.71 | 0.36491 |
Target: 5'- cUCCCCgUCGGccucGACGUGGCC-CGUGg -3' miRNA: 3'- uGGGGGgAGCCc---CUGCACUGGuGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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