Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5566 | 3' | -62.2 | NC_001806.1 | + | 69119 | 0.73 | 0.281385 |
Target: 5'- uGCgCCCC-CGGGGACGcuaaUGGCgCGCGUGc -3' miRNA: 3'- -UGgGGGGaGCCCCUGC----ACUG-GUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 69982 | 0.71 | 0.357332 |
Target: 5'- gGCCCUgguggUCGGGGACGcgcugagGGCCACGUGu -3' miRNA: 3'- -UGGGGgg---AGCCCCUGCa------CUGGUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 72490 | 0.7 | 0.446551 |
Target: 5'- cACCCCCUgCGGGG-CGaGAUCGCGg- -3' miRNA: 3'- -UGGGGGGaGCCCCuGCaCUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 83242 | 0.66 | 0.662962 |
Target: 5'- -gCCCCCUCaagggcccgcggGGGGGCG-GGCgACGg- -3' miRNA: 3'- ugGGGGGAG------------CCCCUGCaCUGgUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 84420 | 0.67 | 0.624044 |
Target: 5'- gACCCCgagacgcagCC-CGGGGACGggGGCCGguuUGUGa -3' miRNA: 3'- -UGGGG---------GGaGCCCCUGCa-CUGGU---GCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 88948 | 0.69 | 0.500139 |
Target: 5'- aACCCCgC-CGGGG-CGUGGuCCACGc- -3' miRNA: 3'- -UGGGGgGaGCCCCuGCACU-GGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 89039 | 0.7 | 0.42098 |
Target: 5'- cCCCCCCgcaguacaccUUGGGGGCGcgcuugaggUGACCGuCGUGc -3' miRNA: 3'- uGGGGGG----------AGCCCCUGC---------ACUGGU-GCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 101099 | 0.68 | 0.565954 |
Target: 5'- aGCCCcacaaaaaacggCCCgCGGGGGuCGUcGACCACGg- -3' miRNA: 3'- -UGGG------------GGGaGCCCCU-GCA-CUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 106484 | 0.71 | 0.36491 |
Target: 5'- cUCCCCgUCGGccucGACGUGGCC-CGUGg -3' miRNA: 3'- uGGGGGgAGCCc---CUGCACUGGuGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 108731 | 0.71 | 0.388301 |
Target: 5'- cACCCCCC-CGGGGACGgcgaGACguuGCGa- -3' miRNA: 3'- -UGGGGGGaGCCCCUGCa---CUGg--UGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 110107 | 0.71 | 0.388301 |
Target: 5'- gGCCCCCUaCGGuGGAUGUGG--GCGUGg -3' miRNA: 3'- -UGGGGGGaGCC-CCUGCACUggUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 112131 | 0.67 | 0.624044 |
Target: 5'- gGCCgUCCUCGGGG-CGUuuGAgCGCGg- -3' miRNA: 3'- -UGGgGGGAGCCCCuGCA--CUgGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 119604 | 0.72 | 0.335268 |
Target: 5'- aGCCCCCCggCGGGGGCcgcuuuGUGGCCccaGCGc- -3' miRNA: 3'- -UGGGGGGa-GCCCCUG------CACUGG---UGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 129862 | 1.08 | 0.001114 |
Target: 5'- cACCCCCCUCGGGGACGUGACCACGUGg -3' miRNA: 3'- -UGGGGGGAGCCCCUGCACUGGUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 131018 | 0.66 | 0.653248 |
Target: 5'- gUCCCCCgcgCGGGuccguuagcgaGACG-GACCACGc- -3' miRNA: 3'- uGGGGGGa--GCCC-----------CUGCaCUGGUGCac -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 144782 | 0.67 | 0.585211 |
Target: 5'- -gUCCCCUCacGGGGCGaaGGCCGCGUa -3' miRNA: 3'- ugGGGGGAGc-CCCUGCa-CUGGUGCAc -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 147039 | 0.72 | 0.321121 |
Target: 5'- gGCCgCCCgCGGGGACGgccccgGAagucuCCGCGUGg -3' miRNA: 3'- -UGGgGGGaGCCCCUGCa-----CU-----GGUGCAC- -5' |
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5566 | 3' | -62.2 | NC_001806.1 | + | 151538 | 0.67 | 0.585211 |
Target: 5'- cGCCCgugggCCCgggcggcCGGGGGCGgcgggGGCCGCGaUGg -3' miRNA: 3'- -UGGG-----GGGa------GCCCCUGCa----CUGGUGC-AC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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