miRNA display CGI


Results 21 - 26 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5566 5' -50.6 NC_001806.1 + 92905 0.73 0.847829
Target:  5'- gGCCGCGUGGUccgc-GCAgGGCGGg- -3'
miRNA:   3'- -UGGCGCACCAauauaUGUgCUGCCag -5'
5566 5' -50.6 NC_001806.1 + 42021 0.73 0.83094
Target:  5'- gGCCGCGgGGUUGg--GguCGugGGUCg -3'
miRNA:   3'- -UGGCGCaCCAAUauaUguGCugCCAG- -5'
5566 5' -50.6 NC_001806.1 + 122444 0.74 0.818653
Target:  5'- uCCGCGUGGUccccgaggaGCACGGCGGcCa -3'
miRNA:   3'- uGGCGCACCAauaua----UGUGCUGCCaG- -5'
5566 5' -50.6 NC_001806.1 + 37740 0.75 0.756376
Target:  5'- aACCGCGUGGUg----GCGuCGAUGGUg -3'
miRNA:   3'- -UGGCGCACCAauauaUGU-GCUGCCAg -5'
5566 5' -50.6 NC_001806.1 + 55069 0.77 0.642676
Target:  5'- cACCGCGUGGg-----GCugGAgGGUCa -3'
miRNA:   3'- -UGGCGCACCaauauaUGugCUgCCAG- -5'
5566 5' -50.6 NC_001806.1 + 129896 1.11 0.007936
Target:  5'- uACCGCGUGGUUAUAUACACGACGGUCg -3'
miRNA:   3'- -UGGCGCACCAAUAUAUGUGCUGCCAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.