Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5566 | 5' | -50.6 | NC_001806.1 | + | 92905 | 0.73 | 0.847829 |
Target: 5'- gGCCGCGUGGUccgc-GCAgGGCGGg- -3' miRNA: 3'- -UGGCGCACCAauauaUGUgCUGCCag -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 42021 | 0.73 | 0.83094 |
Target: 5'- gGCCGCGgGGUUGg--GguCGugGGUCg -3' miRNA: 3'- -UGGCGCaCCAAUauaUguGCugCCAG- -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 122444 | 0.74 | 0.818653 |
Target: 5'- uCCGCGUGGUccccgaggaGCACGGCGGcCa -3' miRNA: 3'- uGGCGCACCAauaua----UGUGCUGCCaG- -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 37740 | 0.75 | 0.756376 |
Target: 5'- aACCGCGUGGUg----GCGuCGAUGGUg -3' miRNA: 3'- -UGGCGCACCAauauaUGU-GCUGCCAg -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 55069 | 0.77 | 0.642676 |
Target: 5'- cACCGCGUGGg-----GCugGAgGGUCa -3' miRNA: 3'- -UGGCGCACCaauauaUGugCUgCCAG- -5' |
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5566 | 5' | -50.6 | NC_001806.1 | + | 129896 | 1.11 | 0.007936 |
Target: 5'- uACCGCGUGGUUAUAUACACGACGGUCg -3' miRNA: 3'- -UGGCGCACCAAUAUAUGUGCUGCCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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