miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 128787 1.09 0.001168
Target:  5'- aCGAGGAGCCCCGUGACGCAGACCGCAg -3'
miRNA:   3'- -GCUCCUCGGGGCACUGCGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 79054 0.81 0.105937
Target:  5'- cCGAGGAGCuCCCGUuuGugGCGGGCgGCGa -3'
miRNA:   3'- -GCUCCUCG-GGGCA--CugCGUCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 22576 0.79 0.125442
Target:  5'- gCGGGGAGCCCCGgcgccGGCGCAGaugacgagggggucGCCGCc -3'
miRNA:   3'- -GCUCCUCGGGGCa----CUGCGUC--------------UGGCGu -5'
5567 3' -60.9 NC_001806.1 + 24694 0.79 0.139663
Target:  5'- --cGGcccGGCCCgGUGGCGCGGGCCGCGg -3'
miRNA:   3'- gcuCC---UCGGGgCACUGCGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 21875 0.76 0.206344
Target:  5'- gCGAGGAcCCCCGcGGCcuccGCGGGCCGCAu -3'
miRNA:   3'- -GCUCCUcGGGGCaCUG----CGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 119601 0.74 0.298857
Target:  5'- --uGGAGCCCCccGGCGgGGGCCGCu -3'
miRNA:   3'- gcuCCUCGGGGcaCUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 65641 0.73 0.312449
Target:  5'- aGAGGGGCCCCGgcggccucccccuggGugGCugcgcugGGGCCGCc -3'
miRNA:   3'- gCUCCUCGGGGCa--------------CugCG-------UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 32986 0.73 0.341025
Target:  5'- --cGGGGCCCCG-GGC-CGGGCCGCc -3'
miRNA:   3'- gcuCCUCGGGGCaCUGcGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 120683 0.73 0.341025
Target:  5'- --cGGA-CCCCGUcGCGCGGGCCGCu -3'
miRNA:   3'- gcuCCUcGGGGCAcUGCGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 27691 0.71 0.395442
Target:  5'- gCGGGaAGCCCCGgggcaccGACGCAGGCCa-- -3'
miRNA:   3'- -GCUCcUCGGGGCa------CUGCGUCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 114168 0.71 0.411987
Target:  5'- gCGAGGAGugccccagcgaCCCCGUGACGgAccCCGCGc -3'
miRNA:   3'- -GCUCCUC-----------GGGGCACUGCgUcuGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 93594 0.71 0.411987
Target:  5'- -cGGGGGCCCCGgGACcgGCAuuugccGGCCGCAa -3'
miRNA:   3'- gcUCCUCGGGGCaCUG--CGU------CUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 51695 0.71 0.428953
Target:  5'- cCGAGGA-CCCCGUGG-GC-GACUGCGa -3'
miRNA:   3'- -GCUCCUcGGGGCACUgCGuCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 72519 0.7 0.464081
Target:  5'- gGGGGAGCCCUGcgucGGCGUGGGCCc-- -3'
miRNA:   3'- gCUCCUCGGGGCa---CUGCGUCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 77305 0.7 0.472191
Target:  5'- gGAGGAGUUCCGgggcGCGCGGgagcucauccaacGCCGCAu -3'
miRNA:   3'- gCUCCUCGGGGCac--UGCGUC-------------UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 113891 0.7 0.473097
Target:  5'- gCGGGGGGCcacgacCCCGUGuACGCGG-CgGCAu -3'
miRNA:   3'- -GCUCCUCG------GGGCAC-UGCGUCuGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 59890 0.7 0.4822
Target:  5'- aCGAGGAGgCCaGUGACGUGGA-CGCc -3'
miRNA:   3'- -GCUCCUCgGGgCACUGCGUCUgGCGu -5'
5567 3' -60.9 NC_001806.1 + 20407 0.69 0.509997
Target:  5'- cCGGGGGGCCCgGgGACGgccaaCGGGCgCGCGg -3'
miRNA:   3'- -GCUCCUCGGGgCaCUGC-----GUCUG-GCGU- -5'
5567 3' -60.9 NC_001806.1 + 77854 0.69 0.509997
Target:  5'- uGGGGGGCCUCGaugGAUGCGGcgGCCGa- -3'
miRNA:   3'- gCUCCUCGGGGCa--CUGCGUC--UGGCgu -5'
5567 3' -60.9 NC_001806.1 + 151457 0.69 0.519412
Target:  5'- gCGGGGcGGCCgCG-GGCGCGcuccuGACCGCGg -3'
miRNA:   3'- -GCUCC-UCGGgGCaCUGCGU-----CUGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.