miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 54 0.69 0.538442
Target:  5'- gGGGGGGgCCCGUuuucGGCGUcuGGCCGCu -3'
miRNA:   3'- gCUCCUCgGGGCA----CUGCGu-CUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 1922 0.69 0.538442
Target:  5'- cCGAGGccAGCaCCGUGcgGCGCAGGucCCGCGc -3'
miRNA:   3'- -GCUCC--UCGgGGCAC--UGCGUCU--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 2814 0.66 0.727808
Target:  5'- gCGGGGgcgggcucgGGCCCCGggggcguggaggggGGCGCGGG-CGCGg -3'
miRNA:   3'- -GCUCC---------UCGGGGCa-------------CUGCGUCUgGCGU- -5'
5567 3' -60.9 NC_001806.1 + 3581 0.69 0.528896
Target:  5'- gCGAGGAuCCCCGcGGCGCcguacccggcgGGcACCGCGc -3'
miRNA:   3'- -GCUCCUcGGGGCaCUGCG-----------UC-UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 4424 0.67 0.655921
Target:  5'- gGGGGGGUggCCCG-GGCGgGGGCgGCGu -3'
miRNA:   3'- gCUCCUCG--GGGCaCUGCgUCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 5598 0.67 0.616453
Target:  5'- --cGGGGgCCCGUGGcCGCGGcCCGUu -3'
miRNA:   3'- gcuCCUCgGGGCACU-GCGUCuGGCGu -5'
5567 3' -60.9 NC_001806.1 + 6622 0.66 0.695101
Target:  5'- uCGAGGcgaccggcGGCgaCCGUuGCGUGGACCGCu -3'
miRNA:   3'- -GCUCC--------UCGg-GGCAcUGCGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 7435 0.67 0.655921
Target:  5'- -cGGGAGCCCCGgaccccACGCAccccCCGCGa -3'
miRNA:   3'- gcUCCUCGGGGCac----UGCGUcu--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 9785 0.68 0.577158
Target:  5'- gGAGGGGCCCCGacgugcggGugGguGGgcucggccaaauCCGCGc -3'
miRNA:   3'- gCUCCUCGGGGCa-------CugCguCU------------GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 9958 0.68 0.557704
Target:  5'- uGGGGAcgcGUCCCGgaacuccaauUGACGgAGGCCGCc -3'
miRNA:   3'- gCUCCU---CGGGGC----------ACUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 10413 0.67 0.626321
Target:  5'- cCGGGGGGUCCCGcUGGCG-GGAgUGCc -3'
miRNA:   3'- -GCUCCUCGGGGC-ACUGCgUCUgGCGu -5'
5567 3' -60.9 NC_001806.1 + 14471 0.68 0.596757
Target:  5'- aCGAGGcuucccaaaAGCCCCa-GAUGcCAGACUGCGc -3'
miRNA:   3'- -GCUCC---------UCGGGGcaCUGC-GUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 20407 0.69 0.509997
Target:  5'- cCGGGGGGCCCgGgGACGgccaaCGGGCgCGCGg -3'
miRNA:   3'- -GCUCCUCGGGgCaCUGC-----GUCUG-GCGU- -5'
5567 3' -60.9 NC_001806.1 + 21196 0.69 0.528896
Target:  5'- gCGGGGGGCCCuCGgguggGGCGCGGAgaCGgAg -3'
miRNA:   3'- -GCUCCUCGGG-GCa----CUGCGUCUg-GCgU- -5'
5567 3' -60.9 NC_001806.1 + 21532 0.66 0.698985
Target:  5'- aCGGGaGGCCCCGcuacgcGGCGCguauccggaccccacGGACCGCc -3'
miRNA:   3'- -GCUCcUCGGGGCa-----CUGCG---------------UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 21875 0.76 0.206344
Target:  5'- gCGAGGAcCCCCGcGGCcuccGCGGGCCGCAu -3'
miRNA:   3'- -GCUCCUcGGGGCaCUG----CGUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 22129 0.66 0.71443
Target:  5'- uGGGGGGCgCCCGaGGCGgAGGaggCGCGa -3'
miRNA:   3'- gCUCCUCG-GGGCaCUGCgUCUg--GCGU- -5'
5567 3' -60.9 NC_001806.1 + 22576 0.79 0.125442
Target:  5'- gCGGGGAGCCCCGgcgccGGCGCAGaugacgagggggucGCCGCc -3'
miRNA:   3'- -GCUCCUCGGGGCa----CUGCGUC--------------UGGCGu -5'
5567 3' -60.9 NC_001806.1 + 23107 0.67 0.626321
Target:  5'- cCGGGGcccugGGCCCCGcgcUGcCGCGGGacCCGCGc -3'
miRNA:   3'- -GCUCC-----UCGGGGC---ACuGCGUCU--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 23458 0.67 0.636193
Target:  5'- cCGcGGcGCCCCGggccgccgcGGCGCAGGCCcGCc -3'
miRNA:   3'- -GCuCCuCGGGGCa--------CUGCGUCUGG-CGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.