miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 3' -60.9 NC_001806.1 + 7435 0.67 0.655921
Target:  5'- -cGGGAGCCCCGgaccccACGCAccccCCGCGa -3'
miRNA:   3'- gcUCCUCGGGGCac----UGCGUcu--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 4424 0.67 0.655921
Target:  5'- gGGGGGGUggCCCG-GGCGgGGGCgGCGu -3'
miRNA:   3'- gCUCCUCG--GGGCaCUGCgUCUGgCGU- -5'
5567 3' -60.9 NC_001806.1 + 65301 0.67 0.654935
Target:  5'- aGGGGGGCCCCcaagggccucgguGggGACGUcGGCCGUc -3'
miRNA:   3'- gCUCCUCGGGG-------------Ca-CUGCGuCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 95614 0.67 0.646062
Target:  5'- gCGAGGuGCugCCCGcGACGUucGCCGCGg -3'
miRNA:   3'- -GCUCCuCG--GGGCaCUGCGucUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 23458 0.67 0.636193
Target:  5'- cCGcGGcGCCCCGggccgccgcGGCGCAGGCCcGCc -3'
miRNA:   3'- -GCuCCuCGGGGCa--------CUGCGUCUGG-CGu -5'
5567 3' -60.9 NC_001806.1 + 51390 0.67 0.636193
Target:  5'- gGAGGGGCUCCuuaGCGCGG-CCGUg -3'
miRNA:   3'- gCUCCUCGGGGcacUGCGUCuGGCGu -5'
5567 3' -60.9 NC_001806.1 + 131494 0.67 0.626321
Target:  5'- cCGAGGGGCCaaguuggcccCCG-GACcCGGGCCGUu -3'
miRNA:   3'- -GCUCCUCGG----------GGCaCUGcGUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 23107 0.67 0.626321
Target:  5'- cCGGGGcccugGGCCCCGcgcUGcCGCGGGacCCGCGc -3'
miRNA:   3'- -GCUCC-----UCGGGGC---ACuGCGUCU--GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 10413 0.67 0.626321
Target:  5'- cCGGGGGGUCCCGcUGGCG-GGAgUGCc -3'
miRNA:   3'- -GCUCCUCGGGGC-ACUGCgUCUgGCGu -5'
5567 3' -60.9 NC_001806.1 + 5598 0.67 0.616453
Target:  5'- --cGGGGgCCCGUGGcCGCGGcCCGUu -3'
miRNA:   3'- gcuCCUCgGGGCACU-GCGUCuGGCGu -5'
5567 3' -60.9 NC_001806.1 + 130862 0.68 0.606596
Target:  5'- gGAGGAccuucgGCCCCGaUGACGUgcuGGACCu-- -3'
miRNA:   3'- gCUCCU------CGGGGC-ACUGCG---UCUGGcgu -5'
5567 3' -60.9 NC_001806.1 + 96111 0.68 0.606596
Target:  5'- gCGGGGAGCUCgaGUuGCGCcgcccGGACUGCAg -3'
miRNA:   3'- -GCUCCUCGGGg-CAcUGCG-----UCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 77146 0.68 0.606596
Target:  5'- gGAGGAGCUCgGggGGCGCGuGGCC-CAa -3'
miRNA:   3'- gCUCCUCGGGgCa-CUGCGU-CUGGcGU- -5'
5567 3' -60.9 NC_001806.1 + 14471 0.68 0.596757
Target:  5'- aCGAGGcuucccaaaAGCCCCa-GAUGcCAGACUGCGc -3'
miRNA:   3'- -GCUCC---------UCGGGGcaCUGC-GUCUGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 83275 0.68 0.586942
Target:  5'- gGAGGGGgUUCGggcgGGCGCGGAggaccCCGCAa -3'
miRNA:   3'- gCUCCUCgGGGCa---CUGCGUCU-----GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 147781 0.68 0.584004
Target:  5'- gCGGGGGGCCCgGggcggGGgGCGGagccuggcaugggcGCCGCGg -3'
miRNA:   3'- -GCUCCUCGGGgCa----CUgCGUC--------------UGGCGU- -5'
5567 3' -60.9 NC_001806.1 + 102170 0.68 0.577158
Target:  5'- gCGAGGAGCCgCUGgauaACGCccaGGGCCGUu -3'
miRNA:   3'- -GCUCCUCGG-GGCac--UGCG---UCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 9785 0.68 0.577158
Target:  5'- gGAGGGGCCCCGacgugcggGugGguGGgcucggccaaauCCGCGc -3'
miRNA:   3'- gCUCCUCGGGGCa-------CugCguCU------------GGCGU- -5'
5567 3' -60.9 NC_001806.1 + 95329 0.68 0.577158
Target:  5'- gCGGcGcGGGCCCCGacgacGACGgGGACCGUg -3'
miRNA:   3'- -GCU-C-CUCGGGGCa----CUGCgUCUGGCGu -5'
5567 3' -60.9 NC_001806.1 + 84412 0.68 0.577158
Target:  5'- uCGAGGcuGaCCCCGaGACGCAGcCCGgGg -3'
miRNA:   3'- -GCUCCu-C-GGGGCaCUGCGUCuGGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.