miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 128825 1.08 0.001779
Target:  5'- cGUCGCCACCUGCACACACCAGACCCAc -3'
miRNA:   3'- -CAGCGGUGGACGUGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 24615 0.82 0.114564
Target:  5'- -aCGCCGCCUGCGCGCGCUGGGgCCu -3'
miRNA:   3'- caGCGGUGGACGUGUGUGGUCUgGGu -5'
5567 5' -58.5 NC_001806.1 + 9990 0.8 0.144439
Target:  5'- --gGCCGCCUGC-CACGCCAGcCCCGg -3'
miRNA:   3'- cagCGGUGGACGuGUGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 78840 0.77 0.231719
Target:  5'- cGUCGCCuCCUGCACGCcgACCuGaACCCGa -3'
miRNA:   3'- -CAGCGGuGGACGUGUG--UGGuC-UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 2494 0.76 0.271788
Target:  5'- cGUCGCCGCCgccGCACGCGgCCugggcggcgggggcGGGCCCGg -3'
miRNA:   3'- -CAGCGGUGGa--CGUGUGU-GG--------------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 36340 0.74 0.328907
Target:  5'- cUC-CCGCCgaGgACGCGCCGGACCCAg -3'
miRNA:   3'- cAGcGGUGGa-CgUGUGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 135644 0.74 0.343932
Target:  5'- gGUCGCgCuCCUGCAauuggguCGCCAGGCCCGc -3'
miRNA:   3'- -CAGCG-GuGGACGUgu-----GUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 22620 0.74 0.350853
Target:  5'- cGUCGCCGCC-GC-CGCACCGGgcgagcgcgcgguGCCCGc -3'
miRNA:   3'- -CAGCGGUGGaCGuGUGUGGUC-------------UGGGU- -5'
5567 5' -58.5 NC_001806.1 + 79092 0.74 0.359445
Target:  5'- cUCGCCGCCaGCGC-CACCgacgaGGACCCc -3'
miRNA:   3'- cAGCGGUGGaCGUGuGUGG-----UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 61434 0.74 0.367382
Target:  5'- aUgGCCGCCaGCGC-CGCCGGGCUCAg -3'
miRNA:   3'- cAgCGGUGGaCGUGuGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23818 0.73 0.383616
Target:  5'- uUgGCCcCCUGCGCGCcUCGGGCCCGc -3'
miRNA:   3'- cAgCGGuGGACGUGUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 2405 0.73 0.408842
Target:  5'- --gGCCGCCaUGCgGCGCAgCGGGCCCGa -3'
miRNA:   3'- cagCGGUGG-ACG-UGUGUgGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 3658 0.72 0.417478
Target:  5'- cUCGUCAUCUGCGCcgGCGCCGGGgcucCCCGc -3'
miRNA:   3'- cAGCGGUGGACGUG--UGUGGUCU----GGGU- -5'
5567 5' -58.5 NC_001806.1 + 147567 0.72 0.417478
Target:  5'- -gCGCCACCgucGCACGCGCCcggcacAGACUCu -3'
miRNA:   3'- caGCGGUGGa--CGUGUGUGG------UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 3805 0.72 0.417478
Target:  5'- --gGCCGCC-GCGUGCGCCAGGCCCc -3'
miRNA:   3'- cagCGGUGGaCGUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 26407 0.72 0.444037
Target:  5'- -cCGCCGCCcccgGC-CGC-CCGGGCCCAc -3'
miRNA:   3'- caGCGGUGGa---CGuGUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 23201 0.72 0.44765
Target:  5'- -gCGCCcCCUGCuggcggcggcggccaGCGCACCGGACgCCGc -3'
miRNA:   3'- caGCGGuGGACG---------------UGUGUGGUCUG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 113960 0.72 0.453099
Target:  5'- --gGCCAgCUGCuGCACAacacCCAGGCCCGa -3'
miRNA:   3'- cagCGGUgGACG-UGUGU----GGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 124828 0.72 0.453099
Target:  5'- cGUCGCCccgaGCCUGgGCGUACCcguGACCCGg -3'
miRNA:   3'- -CAGCGG----UGGACgUGUGUGGu--CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 13626 0.71 0.47152
Target:  5'- --gGcCCGCCUGgaugugguaCACGCGCCGGACCCc -3'
miRNA:   3'- cagC-GGUGGAC---------GUGUGUGGUCUGGGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.