miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 323 0.67 0.719674
Target:  5'- -cCGCCGCgCgcGCGCACGCC--GCCCGg -3'
miRNA:   3'- caGCGGUG-Ga-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 350 0.68 0.649466
Target:  5'- -cCGCCGCCcgccuuuuuUGCGCGCGCgCGcGCCCGc -3'
miRNA:   3'- caGCGGUGG---------ACGUGUGUG-GUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 1388 0.67 0.739201
Target:  5'- -cCGCCGCCaGCACGgugcCGCUGcGGCCCGu -3'
miRNA:   3'- caGCGGUGGaCGUGU----GUGGU-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 1545 0.69 0.608859
Target:  5'- -cCGCgGCCcGCGC-CACCGGGCCgGg -3'
miRNA:   3'- caGCGgUGGaCGUGuGUGGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 1609 0.7 0.528885
Target:  5'- --gGCCGCagcgGCGCGC-CCAGGCCCc -3'
miRNA:   3'- cagCGGUGga--CGUGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 1877 0.66 0.795289
Target:  5'- -gCGCgGCCUcCACGCGCgcgaAGACCCc -3'
miRNA:   3'- caGCGgUGGAcGUGUGUGg---UCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 2405 0.73 0.408842
Target:  5'- --gGCCGCCaUGCgGCGCAgCGGGCCCGa -3'
miRNA:   3'- cagCGGUGG-ACG-UGUGUgGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 2494 0.76 0.271788
Target:  5'- cGUCGCCGCCgccGCACGCGgCCugggcggcgggggcGGGCCCGg -3'
miRNA:   3'- -CAGCGGUGGa--CGUGUGU-GG--------------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 2931 0.66 0.777081
Target:  5'- -cCGCCGCCUcCGgGCGgCCGGGCCgGg -3'
miRNA:   3'- caGCGGUGGAcGUgUGU-GGUCUGGgU- -5'
5567 5' -58.5 NC_001806.1 + 3200 0.66 0.80418
Target:  5'- -cUGCCGCCgGC-CACGCgCAGGuCCCc -3'
miRNA:   3'- caGCGGUGGaCGuGUGUG-GUCU-GGGu -5'
5567 5' -58.5 NC_001806.1 + 3658 0.72 0.417478
Target:  5'- cUCGUCAUCUGCGCcgGCGCCGGGgcucCCCGc -3'
miRNA:   3'- cAGCGGUGGACGUG--UGUGGUCU----GGGU- -5'
5567 5' -58.5 NC_001806.1 + 3805 0.72 0.417478
Target:  5'- --gGCCGCC-GCGUGCGCCAGGCCCc -3'
miRNA:   3'- cagCGGUGGaCGUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 4319 0.67 0.729479
Target:  5'- cGUCGCgGCCgGC-CACcgccGCgCGGGCCCGg -3'
miRNA:   3'- -CAGCGgUGGaCGuGUG----UG-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 9990 0.8 0.144439
Target:  5'- --gGCCGCCUGC-CACGCCAGcCCCGg -3'
miRNA:   3'- cagCGGUGGACGuGUGUGGUCuGGGU- -5'
5567 5' -58.5 NC_001806.1 + 12783 0.67 0.758361
Target:  5'- -cUGCCGCCcaccGCGCcgGCgAUCAGGCCCAu -3'
miRNA:   3'- caGCGGUGGa---CGUG--UG-UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 13626 0.71 0.47152
Target:  5'- --gGcCCGCCUGgaugugguaCACGCGCCGGACCCc -3'
miRNA:   3'- cagC-GGUGGAC---------GUGUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 20107 0.69 0.629158
Target:  5'- -gCGCCGUCUGCGggcgucgguCGCGCCGGGCCUu -3'
miRNA:   3'- caGCGGUGGACGU---------GUGUGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 20159 0.66 0.80418
Target:  5'- -cCGCCcCCcGC-CGC-CCGGGCCCGc -3'
miRNA:   3'- caGCGGuGGaCGuGUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 21420 0.67 0.719674
Target:  5'- -cCGCgGCCUcGC-CGCcCCGGACCCc -3'
miRNA:   3'- caGCGgUGGA-CGuGUGuGGUCUGGGu -5'
5567 5' -58.5 NC_001806.1 + 21495 0.68 0.679805
Target:  5'- -aCGCCGCCgGCG---ACCGGGCCCc -3'
miRNA:   3'- caGCGGUGGaCGUgugUGGUCUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.