miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5567 5' -58.5 NC_001806.1 + 68970 0.66 0.776156
Target:  5'- -cCGCC-CCUGUuggcgcaguuucaGCACACCGugcgggagaucGACCCGg -3'
miRNA:   3'- caGCGGuGGACG-------------UGUGUGGU-----------CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 51819 0.66 0.776156
Target:  5'- cGUgGCCgGCCUGCGCgACGCCcuccaucGGAUUCAg -3'
miRNA:   3'- -CAgCGG-UGGACGUG-UGUGG-------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 26771 0.66 0.76778
Target:  5'- cUCGCCcuccGCCUGCGCGuCACCgcggAGcACCUg -3'
miRNA:   3'- cAGCGG----UGGACGUGU-GUGG----UC-UGGGu -5'
5567 5' -58.5 NC_001806.1 + 101209 0.66 0.76778
Target:  5'- --gGCCGCCcGCACcguauCCGGAUCCAa -3'
miRNA:   3'- cagCGGUGGaCGUGugu--GGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 150941 0.66 0.76778
Target:  5'- -cCGCCACCcgGCGCcggaACCGaGCCCGg -3'
miRNA:   3'- caGCGGUGGa-CGUGug--UGGUcUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 72593 0.66 0.76778
Target:  5'- aGUCGCCGCCacCG-AC-CCGGGCCCGu -3'
miRNA:   3'- -CAGCGGUGGacGUgUGuGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 51251 0.66 0.76778
Target:  5'- -gCGUCACCaUGCA-GCGCCGGACgCGc -3'
miRNA:   3'- caGCGGUGG-ACGUgUGUGGUCUGgGU- -5'
5567 5' -58.5 NC_001806.1 + 45138 0.66 0.76778
Target:  5'- aGUCGCCAUC-GUAC-C-CCcGACCCAa -3'
miRNA:   3'- -CAGCGGUGGaCGUGuGuGGuCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 91193 0.67 0.758361
Target:  5'- -aCGCCgucggggcguACCUgGCGCGCGCCgcgGGACUCGu -3'
miRNA:   3'- caGCGG----------UGGA-CGUGUGUGG---UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 26960 0.67 0.758361
Target:  5'- -cCGcCCGCCUG-GCGCGCCgcggcucguGGGCCCGc -3'
miRNA:   3'- caGC-GGUGGACgUGUGUGG---------UCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 12783 0.67 0.758361
Target:  5'- -cUGCCGCCcaccGCGCcgGCgAUCAGGCCCAu -3'
miRNA:   3'- caGCGGUGGa---CGUG--UG-UGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 97287 0.67 0.748832
Target:  5'- gGUCGCaCACCga-ACACACCAGcuACgCCGc -3'
miRNA:   3'- -CAGCG-GUGGacgUGUGUGGUC--UG-GGU- -5'
5567 5' -58.5 NC_001806.1 + 1388 0.67 0.739201
Target:  5'- -cCGCCGCCaGCACGgugcCGCUGcGGCCCGu -3'
miRNA:   3'- caGCGGUGGaCGUGU----GUGGU-CUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 47696 0.67 0.739201
Target:  5'- -cCGgCAgCUGCAC-CGCCAGGCgCAc -3'
miRNA:   3'- caGCgGUgGACGUGuGUGGUCUGgGU- -5'
5567 5' -58.5 NC_001806.1 + 79703 0.67 0.739201
Target:  5'- -aCGCUcCCUgGCGCGCGCC--ACCCAg -3'
miRNA:   3'- caGCGGuGGA-CGUGUGUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 67091 0.67 0.739201
Target:  5'- -cCGCCACCagGaaguuaaACgACACUAGGCCCGc -3'
miRNA:   3'- caGCGGUGGa-Cg------UG-UGUGGUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 119890 0.67 0.739201
Target:  5'- -cCGCUGCUguccucgGCGCugGCCAcGGCCCu -3'
miRNA:   3'- caGCGGUGGa------CGUGugUGGU-CUGGGu -5'
5567 5' -58.5 NC_001806.1 + 23471 0.67 0.739201
Target:  5'- --gGCCGCCgcgGCGCAgGCCc-GCCCGc -3'
miRNA:   3'- cagCGGUGGa--CGUGUgUGGucUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 4319 0.67 0.729479
Target:  5'- cGUCGCgGCCgGC-CACcgccGCgCGGGCCCGg -3'
miRNA:   3'- -CAGCGgUGGaCGuGUG----UG-GUCUGGGU- -5'
5567 5' -58.5 NC_001806.1 + 96638 0.67 0.729479
Target:  5'- cGUCGCCGCggGC-CACGCC--ACCCu -3'
miRNA:   3'- -CAGCGGUGgaCGuGUGUGGucUGGGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.