Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5567 | 5' | -58.5 | NC_001806.1 | + | 68970 | 0.66 | 0.776156 |
Target: 5'- -cCGCC-CCUGUuggcgcaguuucaGCACACCGugcgggagaucGACCCGg -3' miRNA: 3'- caGCGGuGGACG-------------UGUGUGGU-----------CUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 51819 | 0.66 | 0.776156 |
Target: 5'- cGUgGCCgGCCUGCGCgACGCCcuccaucGGAUUCAg -3' miRNA: 3'- -CAgCGG-UGGACGUG-UGUGG-------UCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 26771 | 0.66 | 0.76778 |
Target: 5'- cUCGCCcuccGCCUGCGCGuCACCgcggAGcACCUg -3' miRNA: 3'- cAGCGG----UGGACGUGU-GUGG----UC-UGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 101209 | 0.66 | 0.76778 |
Target: 5'- --gGCCGCCcGCACcguauCCGGAUCCAa -3' miRNA: 3'- cagCGGUGGaCGUGugu--GGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 150941 | 0.66 | 0.76778 |
Target: 5'- -cCGCCACCcgGCGCcggaACCGaGCCCGg -3' miRNA: 3'- caGCGGUGGa-CGUGug--UGGUcUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 72593 | 0.66 | 0.76778 |
Target: 5'- aGUCGCCGCCacCG-AC-CCGGGCCCGu -3' miRNA: 3'- -CAGCGGUGGacGUgUGuGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 51251 | 0.66 | 0.76778 |
Target: 5'- -gCGUCACCaUGCA-GCGCCGGACgCGc -3' miRNA: 3'- caGCGGUGG-ACGUgUGUGGUCUGgGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 45138 | 0.66 | 0.76778 |
Target: 5'- aGUCGCCAUC-GUAC-C-CCcGACCCAa -3' miRNA: 3'- -CAGCGGUGGaCGUGuGuGGuCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 91193 | 0.67 | 0.758361 |
Target: 5'- -aCGCCgucggggcguACCUgGCGCGCGCCgcgGGACUCGu -3' miRNA: 3'- caGCGG----------UGGA-CGUGUGUGG---UCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 26960 | 0.67 | 0.758361 |
Target: 5'- -cCGcCCGCCUG-GCGCGCCgcggcucguGGGCCCGc -3' miRNA: 3'- caGC-GGUGGACgUGUGUGG---------UCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 12783 | 0.67 | 0.758361 |
Target: 5'- -cUGCCGCCcaccGCGCcgGCgAUCAGGCCCAu -3' miRNA: 3'- caGCGGUGGa---CGUG--UG-UGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 97287 | 0.67 | 0.748832 |
Target: 5'- gGUCGCaCACCga-ACACACCAGcuACgCCGc -3' miRNA: 3'- -CAGCG-GUGGacgUGUGUGGUC--UG-GGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 1388 | 0.67 | 0.739201 |
Target: 5'- -cCGCCGCCaGCACGgugcCGCUGcGGCCCGu -3' miRNA: 3'- caGCGGUGGaCGUGU----GUGGU-CUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 47696 | 0.67 | 0.739201 |
Target: 5'- -cCGgCAgCUGCAC-CGCCAGGCgCAc -3' miRNA: 3'- caGCgGUgGACGUGuGUGGUCUGgGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 79703 | 0.67 | 0.739201 |
Target: 5'- -aCGCUcCCUgGCGCGCGCC--ACCCAg -3' miRNA: 3'- caGCGGuGGA-CGUGUGUGGucUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 67091 | 0.67 | 0.739201 |
Target: 5'- -cCGCCACCagGaaguuaaACgACACUAGGCCCGc -3' miRNA: 3'- caGCGGUGGa-Cg------UG-UGUGGUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 119890 | 0.67 | 0.739201 |
Target: 5'- -cCGCUGCUguccucgGCGCugGCCAcGGCCCu -3' miRNA: 3'- caGCGGUGGa------CGUGugUGGU-CUGGGu -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 23471 | 0.67 | 0.739201 |
Target: 5'- --gGCCGCCgcgGCGCAgGCCc-GCCCGc -3' miRNA: 3'- cagCGGUGGa--CGUGUgUGGucUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 4319 | 0.67 | 0.729479 |
Target: 5'- cGUCGCgGCCgGC-CACcgccGCgCGGGCCCGg -3' miRNA: 3'- -CAGCGgUGGaCGuGUG----UG-GUCUGGGU- -5' |
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5567 | 5' | -58.5 | NC_001806.1 | + | 96638 | 0.67 | 0.729479 |
Target: 5'- cGUCGCCGCggGC-CACGCC--ACCCu -3' miRNA: 3'- -CAGCGGUGgaCGuGUGUGGucUGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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