Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5568 | 3' | -63.3 | NC_001806.1 | + | 92874 | 0.66 | 0.590234 |
Target: 5'- gGUCCCGC-CGu--CCCCCCaGcGUGCAg -3' miRNA: 3'- -CAGGGCGaGUccuGGGGGGaC-CACGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 67356 | 0.66 | 0.580485 |
Target: 5'- --gCCGaUCAGGGCCgCCCCcccgcgcaUGGUGCc -3' miRNA: 3'- cagGGCgAGUCCUGG-GGGG--------ACCACGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 19897 | 0.66 | 0.541889 |
Target: 5'- uUUCUGUcgUCGGaGGCCCCCggGGUGCGu -3' miRNA: 3'- cAGGGCG--AGUC-CUGGGGGgaCCACGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 46376 | 0.66 | 0.532366 |
Target: 5'- -cCCCGaCgcgcCAuGGACCCCCCgGGUGg- -3' miRNA: 3'- caGGGC-Ga---GU-CCUGGGGGGaCCACgu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 77517 | 0.67 | 0.522905 |
Target: 5'- -aCCUGCgagugagCGGaGGCCcggggCCCCUGGUGCu -3' miRNA: 3'- caGGGCGa------GUC-CUGG-----GGGGACCACGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 135606 | 0.67 | 0.504182 |
Target: 5'- ---gCGCUcCAGGGCCCCCgCUGuUGCGc -3' miRNA: 3'- caggGCGA-GUCCUGGGGG-GACcACGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 140949 | 0.67 | 0.485755 |
Target: 5'- cUCCCGUUCcGGGCCCCC---GUGUAa -3' miRNA: 3'- cAGGGCGAGuCCUGGGGGgacCACGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 23519 | 0.67 | 0.485755 |
Target: 5'- -gCCCGCcgAGGGCcccgaCCCCCUGG-GCGg -3' miRNA: 3'- caGGGCGagUCCUG-----GGGGGACCaCGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 127539 | 0.68 | 0.467655 |
Target: 5'- gGUCCUcggcggGCUCGGGgucguACCCCCCaacGGUGUc -3' miRNA: 3'- -CAGGG------CGAGUCC-----UGGGGGGa--CCACGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 78932 | 0.68 | 0.441176 |
Target: 5'- -cCUCGCcCGGGGCCCgCCguguCUGGUGCu -3' miRNA: 3'- caGGGCGaGUCCUGGG-GG----GACCACGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 74004 | 0.68 | 0.432539 |
Target: 5'- -cCCCGCagGGGGcuccgcgcccacCCCCCCUGG-GCc -3' miRNA: 3'- caGGGCGagUCCU------------GGGGGGACCaCGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 99233 | 0.69 | 0.407236 |
Target: 5'- uUCCCGUgacaaaacGGACCCCCUUGGU-CAg -3' miRNA: 3'- cAGGGCGagu-----CCUGGGGGGACCAcGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 120351 | 0.69 | 0.390891 |
Target: 5'- cGUCCCGCUCGGcgacGACCUCCC-GGcccGCu -3' miRNA: 3'- -CAGGGCGAGUC----CUGGGGGGaCCa--CGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 57303 | 0.69 | 0.390891 |
Target: 5'- -cCCCGCgcCAGGGCCCCCaCgcacgcgaGGUGUg -3' miRNA: 3'- caGGGCGa-GUCCUGGGGG-Ga-------CCACGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 17163 | 0.69 | 0.390891 |
Target: 5'- --gUCGCUCcaAGGGCCCCCCcGGgaagGCGg -3' miRNA: 3'- cagGGCGAG--UCCUGGGGGGaCCa---CGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 102362 | 0.69 | 0.38288 |
Target: 5'- --gCCGC-CGGGAgcaCCCCgUGGUGCAu -3' miRNA: 3'- cagGGCGaGUCCUg--GGGGgACCACGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 115104 | 0.7 | 0.359513 |
Target: 5'- cGUCCCcguGUUCGGGugCgCCCaGGUGCc -3' miRNA: 3'- -CAGGG---CGAGUCCugGgGGGaCCACGu -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 96363 | 0.7 | 0.351949 |
Target: 5'- aGUCCCGCcaugcgcCAGGGCgCCCCCgcgcgGGgGCGc -3' miRNA: 3'- -CAGGGCGa------GUCCUG-GGGGGa----CCaCGU- -5' |
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5568 | 3' | -63.3 | NC_001806.1 | + | 128355 | 1.08 | 0.000713 |
Target: 5'- cGUCCCGCUCAGGACCCCCCUGGUGCAa -3' miRNA: 3'- -CAGGGCGAGUCCUGGGGGGACCACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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