miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5568 3' -63.3 NC_001806.1 + 92874 0.66 0.590234
Target:  5'- gGUCCCGC-CGu--CCCCCCaGcGUGCAg -3'
miRNA:   3'- -CAGGGCGaGUccuGGGGGGaC-CACGU- -5'
5568 3' -63.3 NC_001806.1 + 67356 0.66 0.580485
Target:  5'- --gCCGaUCAGGGCCgCCCCcccgcgcaUGGUGCc -3'
miRNA:   3'- cagGGCgAGUCCUGG-GGGG--------ACCACGu -5'
5568 3' -63.3 NC_001806.1 + 19897 0.66 0.541889
Target:  5'- uUUCUGUcgUCGGaGGCCCCCggGGUGCGu -3'
miRNA:   3'- cAGGGCG--AGUC-CUGGGGGgaCCACGU- -5'
5568 3' -63.3 NC_001806.1 + 46376 0.66 0.532366
Target:  5'- -cCCCGaCgcgcCAuGGACCCCCCgGGUGg- -3'
miRNA:   3'- caGGGC-Ga---GU-CCUGGGGGGaCCACgu -5'
5568 3' -63.3 NC_001806.1 + 77517 0.67 0.522905
Target:  5'- -aCCUGCgagugagCGGaGGCCcggggCCCCUGGUGCu -3'
miRNA:   3'- caGGGCGa------GUC-CUGG-----GGGGACCACGu -5'
5568 3' -63.3 NC_001806.1 + 135606 0.67 0.504182
Target:  5'- ---gCGCUcCAGGGCCCCCgCUGuUGCGc -3'
miRNA:   3'- caggGCGA-GUCCUGGGGG-GACcACGU- -5'
5568 3' -63.3 NC_001806.1 + 140949 0.67 0.485755
Target:  5'- cUCCCGUUCcGGGCCCCC---GUGUAa -3'
miRNA:   3'- cAGGGCGAGuCCUGGGGGgacCACGU- -5'
5568 3' -63.3 NC_001806.1 + 23519 0.67 0.485755
Target:  5'- -gCCCGCcgAGGGCcccgaCCCCCUGG-GCGg -3'
miRNA:   3'- caGGGCGagUCCUG-----GGGGGACCaCGU- -5'
5568 3' -63.3 NC_001806.1 + 127539 0.68 0.467655
Target:  5'- gGUCCUcggcggGCUCGGGgucguACCCCCCaacGGUGUc -3'
miRNA:   3'- -CAGGG------CGAGUCC-----UGGGGGGa--CCACGu -5'
5568 3' -63.3 NC_001806.1 + 78932 0.68 0.441176
Target:  5'- -cCUCGCcCGGGGCCCgCCguguCUGGUGCu -3'
miRNA:   3'- caGGGCGaGUCCUGGG-GG----GACCACGu -5'
5568 3' -63.3 NC_001806.1 + 74004 0.68 0.432539
Target:  5'- -cCCCGCagGGGGcuccgcgcccacCCCCCCUGG-GCc -3'
miRNA:   3'- caGGGCGagUCCU------------GGGGGGACCaCGu -5'
5568 3' -63.3 NC_001806.1 + 99233 0.69 0.407236
Target:  5'- uUCCCGUgacaaaacGGACCCCCUUGGU-CAg -3'
miRNA:   3'- cAGGGCGagu-----CCUGGGGGGACCAcGU- -5'
5568 3' -63.3 NC_001806.1 + 120351 0.69 0.390891
Target:  5'- cGUCCCGCUCGGcgacGACCUCCC-GGcccGCu -3'
miRNA:   3'- -CAGGGCGAGUC----CUGGGGGGaCCa--CGu -5'
5568 3' -63.3 NC_001806.1 + 57303 0.69 0.390891
Target:  5'- -cCCCGCgcCAGGGCCCCCaCgcacgcgaGGUGUg -3'
miRNA:   3'- caGGGCGa-GUCCUGGGGG-Ga-------CCACGu -5'
5568 3' -63.3 NC_001806.1 + 17163 0.69 0.390891
Target:  5'- --gUCGCUCcaAGGGCCCCCCcGGgaagGCGg -3'
miRNA:   3'- cagGGCGAG--UCCUGGGGGGaCCa---CGU- -5'
5568 3' -63.3 NC_001806.1 + 102362 0.69 0.38288
Target:  5'- --gCCGC-CGGGAgcaCCCCgUGGUGCAu -3'
miRNA:   3'- cagGGCGaGUCCUg--GGGGgACCACGU- -5'
5568 3' -63.3 NC_001806.1 + 115104 0.7 0.359513
Target:  5'- cGUCCCcguGUUCGGGugCgCCCaGGUGCc -3'
miRNA:   3'- -CAGGG---CGAGUCCugGgGGGaCCACGu -5'
5568 3' -63.3 NC_001806.1 + 96363 0.7 0.351949
Target:  5'- aGUCCCGCcaugcgcCAGGGCgCCCCCgcgcgGGgGCGc -3'
miRNA:   3'- -CAGGGCGa------GUCCUG-GGGGGa----CCaCGU- -5'
5568 3' -63.3 NC_001806.1 + 128355 1.08 0.000713
Target:  5'- cGUCCCGCUCAGGACCCCCCUGGUGCAa -3'
miRNA:   3'- -CAGGGCGAGUCCUGGGGGGACCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.