miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5568 5' -49.6 NC_001806.1 + 2630 0.66 0.994615
Target:  5'- ----gGCCAcGGCGCGCGGGGaGCAGu -3'
miRNA:   3'- uuaugUGGU-CUGUGCGUUUCaCGUCc -5'
5568 5' -49.6 NC_001806.1 + 5648 0.67 0.990381
Target:  5'- --cGCGCCAucugccaugggcGGgGCGCGAGG-GCGGGu -3'
miRNA:   3'- uuaUGUGGU------------CUgUGCGUUUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 6179 0.66 0.995393
Target:  5'- --gGCugCGGAgCACGCGgaccGGGaGCGGGa -3'
miRNA:   3'- uuaUGugGUCU-GUGCGU----UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 16249 0.67 0.990381
Target:  5'- --aGgACCAGACACGUgaccccGGAGacgacaUGCAGGu -3'
miRNA:   3'- uuaUgUGGUCUGUGCG------UUUC------ACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 20897 0.67 0.990381
Target:  5'- --gACGCC-GAUACGCGgacgAAGcGCGGGa -3'
miRNA:   3'- uuaUGUGGuCUGUGCGU----UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 21746 0.7 0.944968
Target:  5'- ----gACCAcGCACGCGAGGcGCGGGc -3'
miRNA:   3'- uuaugUGGUcUGUGCGUUUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 22632 0.71 0.924057
Target:  5'- --cGCACCGGGCgaGCGCGcGGUGCccgccGGGu -3'
miRNA:   3'- uuaUGUGGUCUG--UGCGUuUCACG-----UCC- -5'
5568 5' -49.6 NC_001806.1 + 24860 0.66 0.995393
Target:  5'- --gGCACCGuGCugGCGgcG-GCGGGg -3'
miRNA:   3'- uuaUGUGGUcUGugCGUuuCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 25516 0.68 0.981839
Target:  5'- --aGCGCgGGACGCGCcGGGgaggGCuGGg -3'
miRNA:   3'- uuaUGUGgUCUGUGCGuUUCa---CGuCC- -5'
5568 5' -49.6 NC_001806.1 + 26813 0.69 0.96525
Target:  5'- -cUGCGCCugcGACGCGCGg---GCGGGg -3'
miRNA:   3'- uuAUGUGGu--CUGUGCGUuucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 42630 0.71 0.935045
Target:  5'- -cUGCGCCGcggcGGCGuCGCGuccGGUGCGGGg -3'
miRNA:   3'- uuAUGUGGU----CUGU-GCGUu--UCACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 50003 0.69 0.968568
Target:  5'- --cGCGCCuu-CACGCGGAGgcgcGCGGGu -3'
miRNA:   3'- uuaUGUGGucuGUGCGUUUCa---CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 51263 0.71 0.935045
Target:  5'- --aGCGCCGGACGCGCGgcgcGAGcucccUGCGGc -3'
miRNA:   3'- uuaUGUGGUCUGUGCGU----UUC-----ACGUCc -5'
5568 5' -49.6 NC_001806.1 + 51753 0.66 0.996077
Target:  5'- --gGCGCCAaagcugcuGGCGCGCAccccguucAAGaGCGGGg -3'
miRNA:   3'- uuaUGUGGU--------CUGUGCGU--------UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 57306 0.75 0.780765
Target:  5'- --cGCGCCAGggcccccacGCACGCGAGGUGUGGc -3'
miRNA:   3'- uuaUGUGGUC---------UGUGCGUUUCACGUCc -5'
5568 5' -49.6 NC_001806.1 + 57507 0.67 0.9941
Target:  5'- --gGCGCCAGgcacacacaugaaccACACGCGAcacGCGGGa -3'
miRNA:   3'- uuaUGUGGUC---------------UGUGCGUUucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 59361 0.75 0.790481
Target:  5'- --cGCACCGGcGCAUGCAGGGUGCu-- -3'
miRNA:   3'- uuaUGUGGUC-UGUGCGUUUCACGucc -5'
5568 5' -49.6 NC_001806.1 + 63123 0.66 0.996077
Target:  5'- --aGCuuCAGGCAgGCcguGUGCAGGc -3'
miRNA:   3'- uuaUGugGUCUGUgCGuuuCACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 69573 0.66 0.996676
Target:  5'- --gGCGCCAGcgagcACACGCAcGG-GCGGc -3'
miRNA:   3'- uuaUGUGGUC-----UGUGCGUuUCaCGUCc -5'
5568 5' -49.6 NC_001806.1 + 71360 0.66 0.996077
Target:  5'- --cACGCCAGGCGgacCGCGAGGggGCGc- -3'
miRNA:   3'- uuaUGUGGUCUGU---GCGUUUCa-CGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.