miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5568 5' -49.6 NC_001806.1 + 125832 0.66 0.997197
Target:  5'- --gGCGCCuGACGCGCc----GCGGGc -3'
miRNA:   3'- uuaUGUGGuCUGUGCGuuucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 26813 0.69 0.96525
Target:  5'- -cUGCGCCugcGACGCGCGg---GCGGGg -3'
miRNA:   3'- uuAUGUGGu--CUGUGCGUuucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 50003 0.69 0.968568
Target:  5'- --cGCGCCuu-CACGCGGAGgcgcGCGGGu -3'
miRNA:   3'- uuaUGUGGucuGUGCGUUUCa---CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 72895 0.69 0.977162
Target:  5'- --gGCACCGGGCACGCuacucgGCcGGc -3'
miRNA:   3'- uuaUGUGGUCUGUGCGuuuca-CGuCC- -5'
5568 5' -49.6 NC_001806.1 + 25516 0.68 0.981839
Target:  5'- --aGCGCgGGACGCGCcGGGgaggGCuGGg -3'
miRNA:   3'- uuaUGUGgUCUGUGCGuUUCa---CGuCC- -5'
5568 5' -49.6 NC_001806.1 + 132969 0.68 0.983889
Target:  5'- --aAgACUGGACGCGCu-GGUGguGGc -3'
miRNA:   3'- uuaUgUGGUCUGUGCGuuUCACguCC- -5'
5568 5' -49.6 NC_001806.1 + 108698 0.68 0.985758
Target:  5'- --cGCACCaAGGUACGCGAcGUGCucGGGg -3'
miRNA:   3'- uuaUGUGG-UCUGUGCGUUuCACG--UCC- -5'
5568 5' -49.6 NC_001806.1 + 76674 0.68 0.987456
Target:  5'- -cUGgACCAGGCGCGCucGGcGgAGGa -3'
miRNA:   3'- uuAUgUGGUCUGUGCGuuUCaCgUCC- -5'
5568 5' -49.6 NC_001806.1 + 109684 0.67 0.990249
Target:  5'- --cACAcCCGGGCugGUucgcagcGAGGUGCAGu -3'
miRNA:   3'- uuaUGU-GGUCUGugCG-------UUUCACGUCc -5'
5568 5' -49.6 NC_001806.1 + 87489 0.7 0.949534
Target:  5'- --cGCAgCAGGCACGUAAAGacGCGGa -3'
miRNA:   3'- uuaUGUgGUCUGUGCGUUUCa-CGUCc -5'
5568 5' -49.6 NC_001806.1 + 21746 0.7 0.944968
Target:  5'- ----gACCAcGCACGCGAGGcGCGGGc -3'
miRNA:   3'- uuaugUGGUcUGUGCGUUUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 51263 0.71 0.935045
Target:  5'- --aGCGCCGGACGCGCGgcgcGAGcucccUGCGGc -3'
miRNA:   3'- uuaUGUGGUCUGUGCGU----UUC-----ACGUCc -5'
5568 5' -49.6 NC_001806.1 + 102520 0.78 0.63399
Target:  5'- --cGCgGCCAGGCACGCcAGGUaGCGGGg -3'
miRNA:   3'- uuaUG-UGGUCUGUGCGuUUCA-CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 57306 0.75 0.780765
Target:  5'- --cGCGCCAGggcccccacGCACGCGAGGUGUGGc -3'
miRNA:   3'- uuaUGUGGUC---------UGUGCGUUUCACGUCc -5'
5568 5' -49.6 NC_001806.1 + 59361 0.75 0.790481
Target:  5'- --cGCACCGGcGCAUGCAGGGUGCu-- -3'
miRNA:   3'- uuaUGUGGUC-UGUGCGUUUCACGucc -5'
5568 5' -49.6 NC_001806.1 + 104004 0.74 0.827648
Target:  5'- --cAC-CCGGAgGCGCGAGGgacUGCAGGa -3'
miRNA:   3'- uuaUGuGGUCUgUGCGUUUC---ACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 122645 0.73 0.852641
Target:  5'- aAGUGCACCAG-CugGCGAaaggcuucggagcGGUGgAGGg -3'
miRNA:   3'- -UUAUGUGGUCuGugCGUU-------------UCACgUCC- -5'
5568 5' -49.6 NC_001806.1 + 76723 0.72 0.911999
Target:  5'- uGGUGgACCAGACggagaaggcGCGCGAGcucgacGUGCAGGc -3'
miRNA:   3'- -UUAUgUGGUCUG---------UGCGUUU------CACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 22632 0.71 0.924057
Target:  5'- --cGCACCGGGCgaGCGCGcGGUGCccgccGGGu -3'
miRNA:   3'- uuaUGUGGUCUG--UGCGUuUCACG-----UCC- -5'
5568 5' -49.6 NC_001806.1 + 42630 0.71 0.935045
Target:  5'- -cUGCGCCGcggcGGCGuCGCGuccGGUGCGGGg -3'
miRNA:   3'- uuAUGUGGU----CUGU-GCGUu--UCACGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.