miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5568 5' -49.6 NC_001806.1 + 92084 0.67 0.993735
Target:  5'- --gACGCUGGACcCGUAcgcGUGCGGGc -3'
miRNA:   3'- uuaUGUGGUCUGuGCGUuu-CACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 96371 0.67 0.992636
Target:  5'- cAUGCGCCAGGgcgccccCGCGCGGGGgcgccGguGGu -3'
miRNA:   3'- uUAUGUGGUCU-------GUGCGUUUCa----CguCC- -5'
5568 5' -49.6 NC_001806.1 + 116162 0.67 0.991627
Target:  5'- --cGCugCAG-CGCuGCGAAGgGCGGGu -3'
miRNA:   3'- uuaUGugGUCuGUG-CGUUUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 5648 0.67 0.990381
Target:  5'- --cGCGCCAucugccaugggcGGgGCGCGAGG-GCGGGu -3'
miRNA:   3'- uuaUGUGGU------------CUgUGCGUUUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 134494 0.67 0.990381
Target:  5'- --cACGCCAGAaccUugGCAAAGgucGaCGGGg -3'
miRNA:   3'- uuaUGUGGUCU---GugCGUUUCa--C-GUCC- -5'
5568 5' -49.6 NC_001806.1 + 16249 0.67 0.990381
Target:  5'- --aGgACCAGACACGUgaccccGGAGacgacaUGCAGGu -3'
miRNA:   3'- uuaUgUGGUCUGUGCG------UUUC------ACGUCC- -5'
5568 5' -49.6 NC_001806.1 + 140131 0.67 0.990381
Target:  5'- --gACGCCAGGCGCgGCAcacGGG-GUGGGc -3'
miRNA:   3'- uuaUGUGGUCUGUG-CGU---UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 20897 0.67 0.990381
Target:  5'- --gACGCC-GAUACGCGgacgAAGcGCGGGa -3'
miRNA:   3'- uuaUGUGGuCUGUGCGU----UUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 109684 0.67 0.990249
Target:  5'- --cACAcCCGGGCugGUucgcagcGAGGUGCAGu -3'
miRNA:   3'- uuaUGU-GGUCUGugCG-------UUUCACGUCc -5'
5568 5' -49.6 NC_001806.1 + 76674 0.68 0.987456
Target:  5'- -cUGgACCAGGCGCGCucGGcGgAGGa -3'
miRNA:   3'- uuAUgUGGUCUGUGCGuuUCaCgUCC- -5'
5568 5' -49.6 NC_001806.1 + 108698 0.68 0.985758
Target:  5'- --cGCACCaAGGUACGCGAcGUGCucGGGg -3'
miRNA:   3'- uuaUGUGG-UCUGUGCGUUuCACG--UCC- -5'
5568 5' -49.6 NC_001806.1 + 132969 0.68 0.983889
Target:  5'- --aAgACUGGACGCGCu-GGUGguGGc -3'
miRNA:   3'- uuaUgUGGUCUGUGCGuuUCACguCC- -5'
5568 5' -49.6 NC_001806.1 + 25516 0.68 0.981839
Target:  5'- --aGCGCgGGACGCGCcGGGgaggGCuGGg -3'
miRNA:   3'- uuaUGUGgUCUGUGCGuUUCa---CGuCC- -5'
5568 5' -49.6 NC_001806.1 + 72895 0.69 0.977162
Target:  5'- --gGCACCGGGCACGCuacucgGCcGGc -3'
miRNA:   3'- uuaUGUGGUCUGUGCGuuuca-CGuCC- -5'
5568 5' -49.6 NC_001806.1 + 50003 0.69 0.968568
Target:  5'- --cGCGCCuu-CACGCGGAGgcgcGCGGGu -3'
miRNA:   3'- uuaUGUGGucuGUGCGUUUCa---CGUCC- -5'
5568 5' -49.6 NC_001806.1 + 26813 0.69 0.96525
Target:  5'- -cUGCGCCugcGACGCGCGg---GCGGGg -3'
miRNA:   3'- uuAUGUGGu--CUGUGCGUuucaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 87489 0.7 0.949534
Target:  5'- --cGCAgCAGGCACGUAAAGacGCGGa -3'
miRNA:   3'- uuaUGUgGUCUGUGCGUUUCa-CGUCc -5'
5568 5' -49.6 NC_001806.1 + 21746 0.7 0.944968
Target:  5'- ----gACCAcGCACGCGAGGcGCGGGc -3'
miRNA:   3'- uuaugUGGUcUGUGCGUUUCaCGUCC- -5'
5568 5' -49.6 NC_001806.1 + 51263 0.71 0.935045
Target:  5'- --aGCGCCGGACGCGCGgcgcGAGcucccUGCGGc -3'
miRNA:   3'- uuaUGUGGUCUGUGCGU----UUC-----ACGUCc -5'
5568 5' -49.6 NC_001806.1 + 42630 0.71 0.935045
Target:  5'- -cUGCGCCGcggcGGCGuCGCGuccGGUGCGGGg -3'
miRNA:   3'- uuAUGUGGU----CUGU-GCGUu--UCACGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.