miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5569 5' -56.6 NC_001806.1 + 22897 0.66 0.898938
Target:  5'- gCCCGGcccgCCAgCCCCCCGcGgCCGGa -3'
miRNA:   3'- -GGGUCaaa-GGU-GGGGGGUaCaGGCUa -5'
5569 5' -56.6 NC_001806.1 + 9084 0.66 0.898938
Target:  5'- cCCCAGg--CCggaaGCCCCCCGgagccaCCGAg -3'
miRNA:   3'- -GGGUCaaaGG----UGGGGGGUaca---GGCUa -5'
5569 5' -56.6 NC_001806.1 + 46166 0.66 0.898938
Target:  5'- aCCCAcca-CCGCCCCCCGggccccCCGAa -3'
miRNA:   3'- -GGGUcaaaGGUGGGGGGUaca---GGCUa -5'
5569 5' -56.6 NC_001806.1 + 2198 0.66 0.892411
Target:  5'- gCCGGUccaauugcCCGCCCaggcggCCGUGUCCGGc -3'
miRNA:   3'- gGGUCAaa------GGUGGGg-----GGUACAGGCUa -5'
5569 5' -56.6 NC_001806.1 + 116430 0.66 0.885657
Target:  5'- cCCCAucagCCucguCCCgCCCGUGUUCGAg -3'
miRNA:   3'- -GGGUcaaaGGu---GGG-GGGUACAGGCUa -5'
5569 5' -56.6 NC_001806.1 + 26514 0.66 0.885657
Target:  5'- cCCCGccg-CCGCCCCCCg---CCGGUg -3'
miRNA:   3'- -GGGUcaaaGGUGGGGGGuacaGGCUA- -5'
5569 5' -56.6 NC_001806.1 + 100578 0.66 0.885657
Target:  5'- -aCAGgcUCCGCCCCCCAcauUuuGAa -3'
miRNA:   3'- ggGUCaaAGGUGGGGGGUac-AggCUa -5'
5569 5' -56.6 NC_001806.1 + 82119 0.66 0.878681
Target:  5'- aUCCAGgccgagCCGCCCCUUgaugGUGUCCa-- -3'
miRNA:   3'- -GGGUCaaa---GGUGGGGGG----UACAGGcua -5'
5569 5' -56.6 NC_001806.1 + 127551 0.66 0.864082
Target:  5'- gCUCGGggUCgUACCCCCCAacggUGUCauaGAUg -3'
miRNA:   3'- -GGGUCaaAG-GUGGGGGGU----ACAGg--CUA- -5'
5569 5' -56.6 NC_001806.1 + 78936 0.66 0.864082
Target:  5'- gCCCGGg----GCCCgCCGUGUCUGGUg -3'
miRNA:   3'- -GGGUCaaaggUGGGgGGUACAGGCUA- -5'
5569 5' -56.6 NC_001806.1 + 83009 0.67 0.856469
Target:  5'- gCCCAGccauggcaacUUCGCCCCCCGggGUCCu-- -3'
miRNA:   3'- -GGGUCaa--------AGGUGGGGGGUa-CAGGcua -5'
5569 5' -56.6 NC_001806.1 + 26657 0.67 0.854922
Target:  5'- gCCCGGcccaccgccgCCGCCCCCCGgccCCGGc -3'
miRNA:   3'- -GGGUCaaa-------GGUGGGGGGUacaGGCUa -5'
5569 5' -56.6 NC_001806.1 + 20171 0.67 0.848655
Target:  5'- gCCCGGgc-CCGCCCCCgGgg-CCGGc -3'
miRNA:   3'- -GGGUCaaaGGUGGGGGgUacaGGCUa -5'
5569 5' -56.6 NC_001806.1 + 131572 0.67 0.848655
Target:  5'- aCCGGUUUCCGCgaCCCaCCggGcCCGGc -3'
miRNA:   3'- gGGUCAAAGGUG--GGG-GGuaCaGGCUa -5'
5569 5' -56.6 NC_001806.1 + 148335 0.67 0.840647
Target:  5'- cCCCAGgguccuugCCGCCCCCCGccucaccgucGUCCa-- -3'
miRNA:   3'- -GGGUCaaa-----GGUGGGGGGUa---------CAGGcua -5'
5569 5' -56.6 NC_001806.1 + 113802 0.67 0.838207
Target:  5'- aCCCGGcgcugcugCCACCCCUCGUGUgggacugugacgccCUGAUg -3'
miRNA:   3'- -GGGUCaaa-----GGUGGGGGGUACA--------------GGCUA- -5'
5569 5' -56.6 NC_001806.1 + 134992 0.67 0.832451
Target:  5'- uCCCGGUgcCCGaugCCCCCGcccugGUCCGGc -3'
miRNA:   3'- -GGGUCAaaGGUg--GGGGGUa----CAGGCUa -5'
5569 5' -56.6 NC_001806.1 + 45135 0.67 0.824074
Target:  5'- gCCAGUcgCCAUcguaCCCCCGacccaagcUGUCCGGc -3'
miRNA:   3'- gGGUCAaaGGUG----GGGGGU--------ACAGGCUa -5'
5569 5' -56.6 NC_001806.1 + 19333 0.68 0.815525
Target:  5'- gUCCAGaaaaaaCCGCCCCCCAaGccUCCGGg -3'
miRNA:   3'- -GGGUCaaa---GGUGGGGGGUaC--AGGCUa -5'
5569 5' -56.6 NC_001806.1 + 115811 0.68 0.80681
Target:  5'- cCCUAGcc-CCGCCCCCUuUGUCCc-- -3'
miRNA:   3'- -GGGUCaaaGGUGGGGGGuACAGGcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.