Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 46166 | 0.66 | 0.898938 |
Target: 5'- aCCCAcca-CCGCCCCCCGggccccCCGAa -3' miRNA: 3'- -GGGUcaaaGGUGGGGGGUaca---GGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 9084 | 0.66 | 0.898938 |
Target: 5'- cCCCAGg--CCggaaGCCCCCCGgagccaCCGAg -3' miRNA: 3'- -GGGUCaaaGG----UGGGGGGUaca---GGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 22897 | 0.66 | 0.898938 |
Target: 5'- gCCCGGcccgCCAgCCCCCCGcGgCCGGa -3' miRNA: 3'- -GGGUCaaa-GGU-GGGGGGUaCaGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 2198 | 0.66 | 0.892411 |
Target: 5'- gCCGGUccaauugcCCGCCCaggcggCCGUGUCCGGc -3' miRNA: 3'- gGGUCAaa------GGUGGGg-----GGUACAGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 100578 | 0.66 | 0.885657 |
Target: 5'- -aCAGgcUCCGCCCCCCAcauUuuGAa -3' miRNA: 3'- ggGUCaaAGGUGGGGGGUac-AggCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 26514 | 0.66 | 0.885657 |
Target: 5'- cCCCGccg-CCGCCCCCCg---CCGGUg -3' miRNA: 3'- -GGGUcaaaGGUGGGGGGuacaGGCUA- -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 116430 | 0.66 | 0.885657 |
Target: 5'- cCCCAucagCCucguCCCgCCCGUGUUCGAg -3' miRNA: 3'- -GGGUcaaaGGu---GGG-GGGUACAGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 82119 | 0.66 | 0.878681 |
Target: 5'- aUCCAGgccgagCCGCCCCUUgaugGUGUCCa-- -3' miRNA: 3'- -GGGUCaaa---GGUGGGGGG----UACAGGcua -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 127551 | 0.66 | 0.864082 |
Target: 5'- gCUCGGggUCgUACCCCCCAacggUGUCauaGAUg -3' miRNA: 3'- -GGGUCaaAG-GUGGGGGGU----ACAGg--CUA- -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 78936 | 0.66 | 0.864082 |
Target: 5'- gCCCGGg----GCCCgCCGUGUCUGGUg -3' miRNA: 3'- -GGGUCaaaggUGGGgGGUACAGGCUA- -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 83009 | 0.67 | 0.856469 |
Target: 5'- gCCCAGccauggcaacUUCGCCCCCCGggGUCCu-- -3' miRNA: 3'- -GGGUCaa--------AGGUGGGGGGUa-CAGGcua -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 26657 | 0.67 | 0.854922 |
Target: 5'- gCCCGGcccaccgccgCCGCCCCCCGgccCCGGc -3' miRNA: 3'- -GGGUCaaa-------GGUGGGGGGUacaGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 20171 | 0.67 | 0.848655 |
Target: 5'- gCCCGGgc-CCGCCCCCgGgg-CCGGc -3' miRNA: 3'- -GGGUCaaaGGUGGGGGgUacaGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 131572 | 0.67 | 0.848655 |
Target: 5'- aCCGGUUUCCGCgaCCCaCCggGcCCGGc -3' miRNA: 3'- gGGUCAAAGGUG--GGG-GGuaCaGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 148335 | 0.67 | 0.840647 |
Target: 5'- cCCCAGgguccuugCCGCCCCCCGccucaccgucGUCCa-- -3' miRNA: 3'- -GGGUCaaa-----GGUGGGGGGUa---------CAGGcua -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 113802 | 0.67 | 0.838207 |
Target: 5'- aCCCGGcgcugcugCCACCCCUCGUGUgggacugugacgccCUGAUg -3' miRNA: 3'- -GGGUCaaa-----GGUGGGGGGUACA--------------GGCUA- -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 134992 | 0.67 | 0.832451 |
Target: 5'- uCCCGGUgcCCGaugCCCCCGcccugGUCCGGc -3' miRNA: 3'- -GGGUCAaaGGUg--GGGGGUa----CAGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 45135 | 0.67 | 0.824074 |
Target: 5'- gCCAGUcgCCAUcguaCCCCCGacccaagcUGUCCGGc -3' miRNA: 3'- gGGUCAaaGGUG----GGGGGU--------ACAGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 19333 | 0.68 | 0.815525 |
Target: 5'- gUCCAGaaaaaaCCGCCCCCCAaGccUCCGGg -3' miRNA: 3'- -GGGUCaaa---GGUGGGGGGUaC--AGGCUa -5' |
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5569 | 5' | -56.6 | NC_001806.1 | + | 115811 | 0.68 | 0.80681 |
Target: 5'- cCCUAGcc-CCGCCCCCUuUGUCCc-- -3' miRNA: 3'- -GGGUCaaaGGUGGGGGGuACAGGcua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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