Results 21 - 31 of 31 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 83009 | 0.67 | 0.856469 |
Target: 5'- gCCCAGccauggcaacUUCGCCCCCCGggGUCCu-- -3' miRNA: 3'- -GGGUCaa--------AGGUGGGGGGUa-CAGGcua -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 78936 | 0.66 | 0.864082 |
Target: 5'- gCCCGGg----GCCCgCCGUGUCUGGUg -3' miRNA: 3'- -GGGUCaaaggUGGGgGGUACAGGCUA- -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 127551 | 0.66 | 0.864082 |
Target: 5'- gCUCGGggUCgUACCCCCCAacggUGUCauaGAUg -3' miRNA: 3'- -GGGUCaaAG-GUGGGGGGU----ACAGg--CUA- -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 82119 | 0.66 | 0.878681 |
Target: 5'- aUCCAGgccgagCCGCCCCUUgaugGUGUCCa-- -3' miRNA: 3'- -GGGUCaaa---GGUGGGGGG----UACAGGcua -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 116430 | 0.66 | 0.885657 |
Target: 5'- cCCCAucagCCucguCCCgCCCGUGUUCGAg -3' miRNA: 3'- -GGGUcaaaGGu---GGG-GGGUACAGGCUa -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 26514 | 0.66 | 0.885657 |
Target: 5'- cCCCGccg-CCGCCCCCCg---CCGGUg -3' miRNA: 3'- -GGGUcaaaGGUGGGGGGuacaGGCUA- -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 100578 | 0.66 | 0.885657 |
Target: 5'- -aCAGgcUCCGCCCCCCAcauUuuGAa -3' miRNA: 3'- ggGUCaaAGGUGGGGGGUac-AggCUa -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 2198 | 0.66 | 0.892411 |
Target: 5'- gCCGGUccaauugcCCGCCCaggcggCCGUGUCCGGc -3' miRNA: 3'- gGGUCAaa------GGUGGGg-----GGUACAGGCUa -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 22897 | 0.66 | 0.898938 |
Target: 5'- gCCCGGcccgCCAgCCCCCCGcGgCCGGa -3' miRNA: 3'- -GGGUCaaa-GGU-GGGGGGUaCaGGCUa -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 9084 | 0.66 | 0.898938 |
Target: 5'- cCCCAGg--CCggaaGCCCCCCGgagccaCCGAg -3' miRNA: 3'- -GGGUCaaaGG----UGGGGGGUaca---GGCUa -5' |
|||||||
5569 | 5' | -56.6 | NC_001806.1 | + | 46166 | 0.66 | 0.898938 |
Target: 5'- aCCCAcca-CCGCCCCCCGggccccCCGAa -3' miRNA: 3'- -GGGUcaaaGGUGGGGGGUaca---GGCUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home