miRNA: 3'- caGGAGuaGUGGCUGCUGCCCCu----CCa -5'
miRNA: 3'- -CAGGAGUAGU-GGCUGCUgCccCUCCa -5'
miRNA: 3'- -CAGgAGUAGUGGCuGC--------UGCCCCUCCa -5'
miRNA: 3'- -CAGGAGUAGUGGCUGCUGCCCCUCCA- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 5570 | 3' | -58.2 | NC_001806.1 | + | 83657 | 0.72 | 0.506921 |
|
Target: 5'- -gCUUCcgUACCGACGGCGGGGugcccGGg -3' miRNA: 3'- caGGAGuaGUGGCUGCUGCCCCu----CCa -5' |
|||||||
| 5570 | 3' | -58.2 | NC_001806.1 | + | 21696 | 0.73 | 0.460458 |
|
Target: 5'- cGUCCUCGUCGuCCGACGAgGacGAGGa -3' miRNA: 3'- -CAGGAGUAGU-GGCUGCUgCccCUCCa -5' |
|||||||
| 5570 | 3' | -58.2 | NC_001806.1 | + | 1469 | 0.73 | 0.424964 |
|
Target: 5'- cGUCgUCGUCGCCG-CGcagcaccaGCGGGGGGGc -3' miRNA: 3'- -CAGgAGUAGUGGCuGC--------UGCCCCUCCa -5' |
|||||||
| 5570 | 3' | -58.2 | NC_001806.1 | + | 127091 | 1.07 | 0.002875 |
|
Target: 5'- cGUCCUCAUCACCGACGACGGGGAGGUc -3' miRNA: 3'- -CAGGAGUAGUGGCUGCUGCCCCUCCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home