Results 1 - 20 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 131455 | 0.66 | 0.801872 |
Target: 5'- --uGGUCGUCCgcggaccGGCGgcGCuGuuGCCg -3' miRNA: 3'- auuCCGGUAGG-------UCGCuuCGuCggCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 77557 | 0.66 | 0.811642 |
Target: 5'- cGAGGCCA-CCAGUacgcuGGAuCGGCCGUUc -3' miRNA: 3'- aUUCCGGUaGGUCG-----CUUcGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 50514 | 0.66 | 0.793738 |
Target: 5'- gGGGGCCGagCacgaggcgcugGGCGAcaccGCAGCgCGCCg -3' miRNA: 3'- aUUCCGGUagG-----------UCGCUu---CGUCG-GCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 118185 | 0.66 | 0.793738 |
Target: 5'- --cGGCgGUCCGGCGAA----CCGCCc -3' miRNA: 3'- auuCCGgUAGGUCGCUUcgucGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 112752 | 0.66 | 0.793738 |
Target: 5'- gGAGGCC--CUGGaGAAGCGcaucucGCCGCCa -3' miRNA: 3'- aUUCCGGuaGGUCgCUUCGU------CGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 24218 | 0.66 | 0.793738 |
Target: 5'- --uGGCCcgCCGacgggcccGCGGugucgcGGCAGCaCGCCu -3' miRNA: 3'- auuCCGGuaGGU--------CGCU------UCGUCG-GCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 65313 | 0.66 | 0.793738 |
Target: 5'- aAGGGCC--UCGGUGggGacguCGGCCGUCu -3' miRNA: 3'- aUUCCGGuaGGUCGCuuC----GUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 147207 | 0.66 | 0.792827 |
Target: 5'- --cGGCC--CCGGCGGcggaagaGGCGGCCcCCg -3' miRNA: 3'- auuCCGGuaGGUCGCU-------UCGUCGGcGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 103136 | 0.66 | 0.793738 |
Target: 5'- --uGGCgGcguucUCCAGgGcagcGGCAGCCGCUg -3' miRNA: 3'- auuCCGgU-----AGGUCgCu---UCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 122856 | 0.66 | 0.793738 |
Target: 5'- -cAGGCUAUUaaac--AGCAGCCGCCg -3' miRNA: 3'- auUCCGGUAGgucgcuUCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 4666 | 0.66 | 0.802768 |
Target: 5'- -uGGGCCGgcgggCgCGGCGAcaGGCGGuCCGUg -3' miRNA: 3'- auUCCGGUa----G-GUCGCU--UCGUC-GGCGg -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 22569 | 0.66 | 0.794648 |
Target: 5'- gGGGGCCGcggggagccccggcgCCGGCGcagaugacgaggGGGUcGCCGCCg -3' miRNA: 3'- aUUCCGGUa--------------GGUCGC------------UUCGuCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 24694 | 0.66 | 0.802768 |
Target: 5'- --cGGCCcggcCCGGUGgcGCGGgCCGCg -3' miRNA: 3'- auuCCGGua--GGUCGCuuCGUC-GGCGg -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 22900 | 0.66 | 0.793738 |
Target: 5'- --cGGCCcgCCAGCcccccGCGGCCGg- -3' miRNA: 3'- auuCCGGuaGGUCGcuu--CGUCGGCgg -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 70839 | 0.66 | 0.793738 |
Target: 5'- --cGGCCugcuaucaagCC-GCGgcGCGGCCGCg -3' miRNA: 3'- auuCCGGua--------GGuCGCuuCGUCGGCGg -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 84076 | 0.66 | 0.793738 |
Target: 5'- cGGGGCC--CCAGCu--GCGcGCUGCCg -3' miRNA: 3'- aUUCCGGuaGGUCGcuuCGU-CGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 21587 | 0.66 | 0.793738 |
Target: 5'- ---cGCCcgCCGGCc---CAGCCGCCg -3' miRNA: 3'- auucCGGuaGGUCGcuucGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 96128 | 0.66 | 0.802768 |
Target: 5'- ---cGCCGcCCGGacu-GCAGCCGCCc -3' miRNA: 3'- auucCGGUaGGUCgcuuCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 47995 | 0.66 | 0.793738 |
Target: 5'- cGAGGCCcgCCGGCu--GCGGgaGCUa -3' miRNA: 3'- aUUCCGGuaGGUCGcuuCGUCggCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 3085 | 0.66 | 0.802768 |
Target: 5'- -cAGGUCcg-CGGCGGcGGCGGCCGCg -3' miRNA: 3'- auUCCGGuagGUCGCU-UCGUCGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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