Results 1 - 20 of 210 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5571 | 3' | -57.6 | NC_001806.1 | + | 62951 | 0.66 | 0.828888 |
Target: 5'- aAAGcGCUc-CCAGUGaAAGCGGCCGgCg -3' miRNA: 3'- aUUC-CGGuaGGUCGC-UUCGUCGGCgG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 77368 | 0.74 | 0.353469 |
Target: 5'- cAAGGCCAcaggCCAGaCGGgcgcgggcgcGGCGGCCGCg -3' miRNA: 3'- aUUCCGGUa---GGUC-GCU----------UCGUCGGCGg -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 147911 | 0.74 | 0.353469 |
Target: 5'- gGGGGcCCGUCCGGCcccuCGGCCGCCc -3' miRNA: 3'- aUUCC-GGUAGGUCGcuucGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 2252 | 0.74 | 0.361416 |
Target: 5'- cAGGGCCG-CCAGC-AGGCAGgacagcCCGCCg -3' miRNA: 3'- aUUCCGGUaGGUCGcUUCGUC------GGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 3776 | 0.74 | 0.369487 |
Target: 5'- --cGGUCGUaUCGGCGGcucauggccacGGCGGCCGCCg -3' miRNA: 3'- auuCCGGUA-GGUCGCU-----------UCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 100618 | 0.74 | 0.37768 |
Target: 5'- gGAGGUagguguGUCCGGCGAucccGGCcuGCCGCCg -3' miRNA: 3'- aUUCCGg-----UAGGUCGCU----UCGu-CGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 27250 | 0.74 | 0.385995 |
Target: 5'- -cGGGCCG-CCucgggGGCGGgacuggccaaucGGCGGCCGCCa -3' miRNA: 3'- auUCCGGUaGG-----UCGCU------------UCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 22852 | 0.73 | 0.394429 |
Target: 5'- gAGGGCUucgaCGGCGAccuGGCGGCCGUCc -3' miRNA: 3'- aUUCCGGuag-GUCGCU---UCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 144188 | 0.73 | 0.394429 |
Target: 5'- --cGGCCGcCgCAGcCGccGCAGCCGCCg -3' miRNA: 3'- auuCCGGUaG-GUC-GCuuCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 150670 | 0.75 | 0.345647 |
Target: 5'- -cGGGCCccgCC-GCGcuGGCGGCCGCCg -3' miRNA: 3'- auUCCGGua-GGuCGCu-UCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 1923 | 0.75 | 0.345647 |
Target: 5'- cGAGGCCAgcaCCGuGCGgcGCAggucccgcGCCGCCg -3' miRNA: 3'- aUUCCGGUa--GGU-CGCuuCGU--------CGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 23935 | 0.75 | 0.344871 |
Target: 5'- --uGGCCGg-CGGCGggGCcugggggGGCCGCCg -3' miRNA: 3'- auuCCGGUagGUCGCuuCG-------UCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 1726 | 0.8 | 0.159131 |
Target: 5'- --cGGCCGUCCAGCGccGGCAGCacgGCCc -3' miRNA: 3'- auuCCGGUAGGUCGCu-UCGUCGg--CGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 3820 | 0.78 | 0.21528 |
Target: 5'- -cAGGCC--CCAGcCGAAGCGGCCgGCCg -3' miRNA: 3'- auUCCGGuaGGUC-GCUUCGUCGG-CGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 2652 | 0.77 | 0.237475 |
Target: 5'- -uAGGCC-UCCAGgGcGGCGGCCGCg -3' miRNA: 3'- auUCCGGuAGGUCgCuUCGUCGGCGg -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 93275 | 0.76 | 0.274322 |
Target: 5'- cGGGGCauUAUCUccgagGGCGggGCGGCCGUCg -3' miRNA: 3'- aUUCCG--GUAGG-----UCGCuuCGUCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 23053 | 0.76 | 0.280891 |
Target: 5'- --uGGCCGgcggCAGCGAGGCcgccguGGCCGCCg -3' miRNA: 3'- auuCCGGUag--GUCGCUUCG------UCGGCGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 102522 | 0.76 | 0.294402 |
Target: 5'- --cGGCCAggcacgCCagguAGCGggGCAGCCgGCCc -3' miRNA: 3'- auuCCGGUa-----GG----UCGCuuCGUCGG-CGG- -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 151432 | 0.76 | 0.300645 |
Target: 5'- gGGGGCCcaCCGGCGGggggcggcggcggGGCGGCCGCg -3' miRNA: 3'- aUUCCGGuaGGUCGCU-------------UCGUCGGCGg -5' |
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5571 | 3' | -57.6 | NC_001806.1 | + | 143621 | 0.75 | 0.330376 |
Target: 5'- gGGGGCCGuuaucUCCAGCGccccguccGGCGcGCCGCCc -3' miRNA: 3'- aUUCCGGU-----AGGUCGCu-------UCGU-CGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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