miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 127024 1.11 0.001412
Target:  5'- gACGACACGCUCGCCGAGCUAUGGGCCu -3'
miRNA:   3'- -UGCUGUGCGAGCGGCUCGAUACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 107016 0.81 0.152137
Target:  5'- cGCG-CGCGCUUGCCGGGUUGgccgcccgcgGGGCCg -3'
miRNA:   3'- -UGCuGUGCGAGCGGCUCGAUa---------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 133447 0.78 0.225608
Target:  5'- cGCGACACGCUgCGaCGGGUccUGGGCCu -3'
miRNA:   3'- -UGCUGUGCGA-GCgGCUCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 106870 0.76 0.285473
Target:  5'- -gGACGCGggCGCCGAGCa--GGGCCc -3'
miRNA:   3'- ugCUGUGCgaGCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 116907 0.76 0.305725
Target:  5'- uACGAgGCGCUCGUCGccuGGCUGacccacgcGGGCCa -3'
miRNA:   3'- -UGCUgUGCGAGCGGC---UCGAUa-------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 47583 0.75 0.337388
Target:  5'- uACGAaGCGCUcucucguuucuuccaCGCCGAGCUAcGGGCg -3'
miRNA:   3'- -UGCUgUGCGA---------------GCGGCUCGAUaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 132148 0.75 0.36031
Target:  5'- gGCGGCGCGCgUUGCCGAgcaucccgacgcgcgGCUggcGUGGGCg -3'
miRNA:   3'- -UGCUGUGCG-AGCGGCU---------------CGA---UACCCGg -5'
5571 5' -58.1 NC_001806.1 + 37906 0.74 0.397514
Target:  5'- cGCGcCACGcCUCGCCauggGGGCgccgGGGCCg -3'
miRNA:   3'- -UGCuGUGC-GAGCGG----CUCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 147645 0.74 0.397514
Target:  5'- cACGGCGCGCgucCGCgGGGCgg-GcGGCCg -3'
miRNA:   3'- -UGCUGUGCGa--GCGgCUCGauaC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 23131 0.74 0.414442
Target:  5'- cGCGGgaccCGCGCcUGCCGAGCUccGcGGCCg -3'
miRNA:   3'- -UGCU----GUGCGaGCGGCUCGAuaC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 52761 0.74 0.414442
Target:  5'- aACGACcCGgUCGCCGAGCcccccgcUGcGGCCa -3'
miRNA:   3'- -UGCUGuGCgAGCGGCUCGau-----AC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 32928 0.73 0.449586
Target:  5'- aACcACACGCaugCGCCGGGCcguUGUgGGGCCc -3'
miRNA:   3'- -UGcUGUGCGa--GCGGCUCG---AUA-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 125905 0.73 0.458627
Target:  5'- gGCGGcCACGCaaaaccagGCCGAcugccaGCUAUGGGCCc -3'
miRNA:   3'- -UGCU-GUGCGag------CGGCU------CGAUACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 11858 0.72 0.466845
Target:  5'- gGCGGguugguaUACGCUCGCCgGGGCcagacgcgGGGCCg -3'
miRNA:   3'- -UGCU-------GUGCGAGCGG-CUCGaua-----CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 26964 0.72 0.476993
Target:  5'- cCGcCugGCgCGCCGcGGCUcGUGGGCCc -3'
miRNA:   3'- uGCuGugCGaGCGGC-UCGA-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 35826 0.72 0.48071
Target:  5'- cGCGugGCGgccuccuagggucaaUUCGCgCGAGCUGUacaGGGCCc -3'
miRNA:   3'- -UGCugUGC---------------GAGCG-GCUCGAUA---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 132664 0.72 0.486311
Target:  5'- cGCGGC-CGCUuaCGCCGcGCUccuggGGGCCu -3'
miRNA:   3'- -UGCUGuGCGA--GCGGCuCGAua---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 130220 0.72 0.495716
Target:  5'- uGCGACACG-UCGCUGGGgCgg-GGGUCg -3'
miRNA:   3'- -UGCUGUGCgAGCGGCUC-GauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 76328 0.72 0.505201
Target:  5'- gGCGGCG-GC-CGCCGAGCUuguccGGGCa -3'
miRNA:   3'- -UGCUGUgCGaGCGGCUCGAua---CCCGg -5'
5571 5' -58.1 NC_001806.1 + 129230 0.72 0.505201
Target:  5'- aGCGACGCgGUUCGCUGAGUca--GGCCu -3'
miRNA:   3'- -UGCUGUG-CGAGCGGCUCGauacCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.