miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 367 0.67 0.779896
Target:  5'- uGCGcGCGCGCgCGCCc-GCgggGGGCCc -3'
miRNA:   3'- -UGC-UGUGCGaGCGGcuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 1546 0.67 0.779896
Target:  5'- cGCGGCccGCGC-CaCCGGGCc--GGGCCg -3'
miRNA:   3'- -UGCUG--UGCGaGcGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 1634 0.67 0.752013
Target:  5'- aGCG-CGCGCaggCGgCGuGCgaGUGGGCCu -3'
miRNA:   3'- -UGCuGUGCGa--GCgGCuCGa-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 2666 0.71 0.54387
Target:  5'- gGCGGCcgcggGCGC-CGCCGuGUggcUGGGCCc -3'
miRNA:   3'- -UGCUG-----UGCGaGCGGCuCGau-ACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 2869 0.67 0.770718
Target:  5'- -gGGCGCGggCGuCCGAGCcggGGGCg -3'
miRNA:   3'- ugCUGUGCgaGC-GGCUCGauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 3353 0.67 0.797859
Target:  5'- -gGGCugGCggGCCGGGCccc-GGCCa -3'
miRNA:   3'- ugCUGugCGagCGGCUCGauacCCGG- -5'
5571 5' -58.1 NC_001806.1 + 5143 0.67 0.761421
Target:  5'- cCGACGCcaUCGCCGAuGCg--GGGCg -3'
miRNA:   3'- uGCUGUGcgAGCGGCU-CGauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 11858 0.72 0.466845
Target:  5'- gGCGGguugguaUACGCUCGCCgGGGCcagacgcgGGGCCg -3'
miRNA:   3'- -UGCU-------GUGCGAGCGG-CUCGaua-----CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 21482 0.69 0.693728
Target:  5'- gACGACGCaGCcgaCGCCGccGGCgaccGGGCCc -3'
miRNA:   3'- -UGCUGUG-CGa--GCGGC--UCGaua-CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 21755 0.71 0.5244
Target:  5'- cGCGAgGCGCgggcCGUCGGGCg--GGGUCc -3'
miRNA:   3'- -UGCUgUGCGa---GCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 22185 0.66 0.831983
Target:  5'- gGCGGC-CGUgugggCGcCCGAGC--UGGGCg -3'
miRNA:   3'- -UGCUGuGCGa----GC-GGCUCGauACCCGg -5'
5571 5' -58.1 NC_001806.1 + 22381 0.7 0.593451
Target:  5'- aGCGugGCGCggGCCGuGCcccaccUGGGCUa -3'
miRNA:   3'- -UGCugUGCGagCGGCuCGau----ACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 22543 0.69 0.693728
Target:  5'- uUGGCGCGCgagaaCGCgGcGCUGacggGGGCCg -3'
miRNA:   3'- uGCUGUGCGa----GCGgCuCGAUa---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 22639 0.67 0.779896
Target:  5'- gGCGAgCGCGCggugccCGCCGGGUac-GGcGCCg -3'
miRNA:   3'- -UGCU-GUGCGa-----GCGGCUCGauaCC-CGG- -5'
5571 5' -58.1 NC_001806.1 + 22864 0.67 0.770718
Target:  5'- gGCGAcCugGCg-GCCGucccggGGCUGgccgGGGCCc -3'
miRNA:   3'- -UGCU-GugCGagCGGC------UCGAUa---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 23010 0.66 0.831983
Target:  5'- cGCGACGCGCUggugcucaugCGCCu-GCgcgGGGaCCu -3'
miRNA:   3'- -UGCUGUGCGA----------GCGGcuCGauaCCC-GG- -5'
5571 5' -58.1 NC_001806.1 + 23083 0.67 0.761421
Target:  5'- cCGuGCGCGCcgugagccuggUCGCCgGGGCccUGGGCCc -3'
miRNA:   3'- uGC-UGUGCG-----------AGCGG-CUCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 23131 0.74 0.414442
Target:  5'- cGCGGgaccCGCGCcUGCCGAGCUccGcGGCCg -3'
miRNA:   3'- -UGCU----GUGCGaGCGGCUCGAuaC-CCGG- -5'
5571 5' -58.1 NC_001806.1 + 23219 0.66 0.823697
Target:  5'- gGCGGCcagcgcaccggACGC-CGCCGAcgcGCUGgcGGCCg -3'
miRNA:   3'- -UGCUG-----------UGCGaGCGGCU---CGAUacCCGG- -5'
5571 5' -58.1 NC_001806.1 + 24212 0.7 0.583455
Target:  5'- uGCGACugGCcCGCCGAc----GGGCCc -3'
miRNA:   3'- -UGCUGugCGaGCGGCUcgauaCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.