Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5571 | 5' | -58.1 | NC_001806.1 | + | 367 | 0.67 | 0.779896 |
Target: 5'- uGCGcGCGCGCgCGCCc-GCgggGGGCCc -3' miRNA: 3'- -UGC-UGUGCGaGCGGcuCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 1546 | 0.67 | 0.779896 |
Target: 5'- cGCGGCccGCGC-CaCCGGGCc--GGGCCg -3' miRNA: 3'- -UGCUG--UGCGaGcGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 1634 | 0.67 | 0.752013 |
Target: 5'- aGCG-CGCGCaggCGgCGuGCgaGUGGGCCu -3' miRNA: 3'- -UGCuGUGCGa--GCgGCuCGa-UACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 2666 | 0.71 | 0.54387 |
Target: 5'- gGCGGCcgcggGCGC-CGCCGuGUggcUGGGCCc -3' miRNA: 3'- -UGCUG-----UGCGaGCGGCuCGau-ACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 2869 | 0.67 | 0.770718 |
Target: 5'- -gGGCGCGggCGuCCGAGCcggGGGCg -3' miRNA: 3'- ugCUGUGCgaGC-GGCUCGauaCCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 3353 | 0.67 | 0.797859 |
Target: 5'- -gGGCugGCggGCCGGGCccc-GGCCa -3' miRNA: 3'- ugCUGugCGagCGGCUCGauacCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 5143 | 0.67 | 0.761421 |
Target: 5'- cCGACGCcaUCGCCGAuGCg--GGGCg -3' miRNA: 3'- uGCUGUGcgAGCGGCU-CGauaCCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 11858 | 0.72 | 0.466845 |
Target: 5'- gGCGGguugguaUACGCUCGCCgGGGCcagacgcgGGGCCg -3' miRNA: 3'- -UGCU-------GUGCGAGCGG-CUCGaua-----CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 21482 | 0.69 | 0.693728 |
Target: 5'- gACGACGCaGCcgaCGCCGccGGCgaccGGGCCc -3' miRNA: 3'- -UGCUGUG-CGa--GCGGC--UCGaua-CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 21755 | 0.71 | 0.5244 |
Target: 5'- cGCGAgGCGCgggcCGUCGGGCg--GGGUCc -3' miRNA: 3'- -UGCUgUGCGa---GCGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 22185 | 0.66 | 0.831983 |
Target: 5'- gGCGGC-CGUgugggCGcCCGAGC--UGGGCg -3' miRNA: 3'- -UGCUGuGCGa----GC-GGCUCGauACCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 22381 | 0.7 | 0.593451 |
Target: 5'- aGCGugGCGCggGCCGuGCcccaccUGGGCUa -3' miRNA: 3'- -UGCugUGCGagCGGCuCGau----ACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 22543 | 0.69 | 0.693728 |
Target: 5'- uUGGCGCGCgagaaCGCgGcGCUGacggGGGCCg -3' miRNA: 3'- uGCUGUGCGa----GCGgCuCGAUa---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 22639 | 0.67 | 0.779896 |
Target: 5'- gGCGAgCGCGCggugccCGCCGGGUac-GGcGCCg -3' miRNA: 3'- -UGCU-GUGCGa-----GCGGCUCGauaCC-CGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 22864 | 0.67 | 0.770718 |
Target: 5'- gGCGAcCugGCg-GCCGucccggGGCUGgccgGGGCCc -3' miRNA: 3'- -UGCU-GugCGagCGGC------UCGAUa---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 23010 | 0.66 | 0.831983 |
Target: 5'- cGCGACGCGCUggugcucaugCGCCu-GCgcgGGGaCCu -3' miRNA: 3'- -UGCUGUGCGA----------GCGGcuCGauaCCC-GG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 23083 | 0.67 | 0.761421 |
Target: 5'- cCGuGCGCGCcgugagccuggUCGCCgGGGCccUGGGCCc -3' miRNA: 3'- uGC-UGUGCG-----------AGCGG-CUCGauACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 23131 | 0.74 | 0.414442 |
Target: 5'- cGCGGgaccCGCGCcUGCCGAGCUccGcGGCCg -3' miRNA: 3'- -UGCU----GUGCGaGCGGCUCGAuaC-CCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 23219 | 0.66 | 0.823697 |
Target: 5'- gGCGGCcagcgcaccggACGC-CGCCGAcgcGCUGgcGGCCg -3' miRNA: 3'- -UGCUG-----------UGCGaGCGGCU---CGAUacCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 24212 | 0.7 | 0.583455 |
Target: 5'- uGCGACugGCcCGCCGAc----GGGCCc -3' miRNA: 3'- -UGCUGugCGaGCGGCUcgauaCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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