miRNA display CGI


Results 21 - 40 of 114 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5571 5' -58.1 NC_001806.1 + 26506 0.67 0.797859
Target:  5'- cGCGGC-CGCccCGCCGccgccccccGCcgGUGGGCCc -3'
miRNA:   3'- -UGCUGuGCGa-GCGGCu--------CGa-UACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 34399 0.67 0.797859
Target:  5'- -gGGCgGCGgUgGCCGGGCc--GGGCCg -3'
miRNA:   3'- ugCUG-UGCgAgCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 3353 0.67 0.797859
Target:  5'- -gGGCugGCggGCCGGGCccc-GGCCa -3'
miRNA:   3'- ugCUGugCGagCGGCUCGauacCCGG- -5'
5571 5' -58.1 NC_001806.1 + 65173 0.67 0.796088
Target:  5'- gACGAC-CGgUCGuCCGAGaCgaacuccgcgGGGCCg -3'
miRNA:   3'- -UGCUGuGCgAGC-GGCUC-Gaua-------CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 33597 0.67 0.792528
Target:  5'- cACG-CGCGCccuuaauggaccggCGCgGGGCgggGGGCCg -3'
miRNA:   3'- -UGCuGUGCGa-------------GCGgCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 61530 0.67 0.788946
Target:  5'- cCGuACACGCg-GUCGGGCgg-GGGCUu -3'
miRNA:   3'- uGC-UGUGCGagCGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 82693 0.67 0.788946
Target:  5'- gGCGGCGagcaGCUCGCCGuGCacacacgcggUGUccgGGGUCu -3'
miRNA:   3'- -UGCUGUg---CGAGCGGCuCG----------AUA---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 92184 0.67 0.788946
Target:  5'- cACGGgGUGUUCGCCGGGCaGUcGGUCg -3'
miRNA:   3'- -UGCUgUGCGAGCGGCUCGaUAcCCGG- -5'
5571 5' -58.1 NC_001806.1 + 1546 0.67 0.779896
Target:  5'- cGCGGCccGCGC-CaCCGGGCc--GGGCCg -3'
miRNA:   3'- -UGCUG--UGCGaGcGGCUCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 367 0.67 0.779896
Target:  5'- uGCGcGCGCGCgCGCCc-GCgggGGGCCc -3'
miRNA:   3'- -UGC-UGUGCGaGCGGcuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 152077 0.67 0.779896
Target:  5'- uGCGcGCGCGCgCGCCc-GCgggGGGCCc -3'
miRNA:   3'- -UGC-UGUGCGaGCGGcuCGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 40698 0.67 0.779896
Target:  5'- uACGGCaaGCGCagGCUGuGGCcGUGGGCg -3'
miRNA:   3'- -UGCUG--UGCGagCGGC-UCGaUACCCGg -5'
5571 5' -58.1 NC_001806.1 + 105900 0.67 0.779896
Target:  5'- cGCGACACGaaCaCCGGGCgucUGUGGcuGCCa -3'
miRNA:   3'- -UGCUGUGCgaGcGGCUCG---AUACC--CGG- -5'
5571 5' -58.1 NC_001806.1 + 147764 0.67 0.779896
Target:  5'- cCGACGCgGC-CGCgGAcGCgggGGGCCc -3'
miRNA:   3'- uGCUGUG-CGaGCGgCU-CGauaCCCGG- -5'
5571 5' -58.1 NC_001806.1 + 22639 0.67 0.779896
Target:  5'- gGCGAgCGCGCggugccCGCCGGGUac-GGcGCCg -3'
miRNA:   3'- -UGCU-GUGCGa-----GCGGCUCGauaCC-CGG- -5'
5571 5' -58.1 NC_001806.1 + 2869 0.67 0.770718
Target:  5'- -gGGCGCGggCGuCCGAGCcggGGGCg -3'
miRNA:   3'- ugCUGUGCgaGC-GGCUCGauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 22864 0.67 0.770718
Target:  5'- gGCGAcCugGCg-GCCGucccggGGCUGgccgGGGCCc -3'
miRNA:   3'- -UGCU-GugCGagCGGC------UCGAUa---CCCGG- -5'
5571 5' -58.1 NC_001806.1 + 23083 0.67 0.761421
Target:  5'- cCGuGCGCGCcgugagccuggUCGCCgGGGCccUGGGCCc -3'
miRNA:   3'- uGC-UGUGCG-----------AGCGG-CUCGauACCCGG- -5'
5571 5' -58.1 NC_001806.1 + 5143 0.67 0.761421
Target:  5'- cCGACGCcaUCGCCGAuGCg--GGGCg -3'
miRNA:   3'- uGCUGUGcgAGCGGCU-CGauaCCCGg -5'
5571 5' -58.1 NC_001806.1 + 1634 0.67 0.752013
Target:  5'- aGCG-CGCGCaggCGgCGuGCgaGUGGGCCu -3'
miRNA:   3'- -UGCuGUGCGa--GCgGCuCGa-UACCCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.