Results 21 - 40 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5571 | 5' | -58.1 | NC_001806.1 | + | 26506 | 0.67 | 0.797859 |
Target: 5'- cGCGGC-CGCccCGCCGccgccccccGCcgGUGGGCCc -3' miRNA: 3'- -UGCUGuGCGa-GCGGCu--------CGa-UACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 34399 | 0.67 | 0.797859 |
Target: 5'- -gGGCgGCGgUgGCCGGGCc--GGGCCg -3' miRNA: 3'- ugCUG-UGCgAgCGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 3353 | 0.67 | 0.797859 |
Target: 5'- -gGGCugGCggGCCGGGCccc-GGCCa -3' miRNA: 3'- ugCUGugCGagCGGCUCGauacCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 65173 | 0.67 | 0.796088 |
Target: 5'- gACGAC-CGgUCGuCCGAGaCgaacuccgcgGGGCCg -3' miRNA: 3'- -UGCUGuGCgAGC-GGCUC-Gaua-------CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 33597 | 0.67 | 0.792528 |
Target: 5'- cACG-CGCGCccuuaauggaccggCGCgGGGCgggGGGCCg -3' miRNA: 3'- -UGCuGUGCGa-------------GCGgCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 61530 | 0.67 | 0.788946 |
Target: 5'- cCGuACACGCg-GUCGGGCgg-GGGCUu -3' miRNA: 3'- uGC-UGUGCGagCGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 82693 | 0.67 | 0.788946 |
Target: 5'- gGCGGCGagcaGCUCGCCGuGCacacacgcggUGUccgGGGUCu -3' miRNA: 3'- -UGCUGUg---CGAGCGGCuCG----------AUA---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 92184 | 0.67 | 0.788946 |
Target: 5'- cACGGgGUGUUCGCCGGGCaGUcGGUCg -3' miRNA: 3'- -UGCUgUGCGAGCGGCUCGaUAcCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 1546 | 0.67 | 0.779896 |
Target: 5'- cGCGGCccGCGC-CaCCGGGCc--GGGCCg -3' miRNA: 3'- -UGCUG--UGCGaGcGGCUCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 367 | 0.67 | 0.779896 |
Target: 5'- uGCGcGCGCGCgCGCCc-GCgggGGGCCc -3' miRNA: 3'- -UGC-UGUGCGaGCGGcuCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 152077 | 0.67 | 0.779896 |
Target: 5'- uGCGcGCGCGCgCGCCc-GCgggGGGCCc -3' miRNA: 3'- -UGC-UGUGCGaGCGGcuCGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 40698 | 0.67 | 0.779896 |
Target: 5'- uACGGCaaGCGCagGCUGuGGCcGUGGGCg -3' miRNA: 3'- -UGCUG--UGCGagCGGC-UCGaUACCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 105900 | 0.67 | 0.779896 |
Target: 5'- cGCGACACGaaCaCCGGGCgucUGUGGcuGCCa -3' miRNA: 3'- -UGCUGUGCgaGcGGCUCG---AUACC--CGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 147764 | 0.67 | 0.779896 |
Target: 5'- cCGACGCgGC-CGCgGAcGCgggGGGCCc -3' miRNA: 3'- uGCUGUG-CGaGCGgCU-CGauaCCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 22639 | 0.67 | 0.779896 |
Target: 5'- gGCGAgCGCGCggugccCGCCGGGUac-GGcGCCg -3' miRNA: 3'- -UGCU-GUGCGa-----GCGGCUCGauaCC-CGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 2869 | 0.67 | 0.770718 |
Target: 5'- -gGGCGCGggCGuCCGAGCcggGGGCg -3' miRNA: 3'- ugCUGUGCgaGC-GGCUCGauaCCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 22864 | 0.67 | 0.770718 |
Target: 5'- gGCGAcCugGCg-GCCGucccggGGCUGgccgGGGCCc -3' miRNA: 3'- -UGCU-GugCGagCGGC------UCGAUa---CCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 23083 | 0.67 | 0.761421 |
Target: 5'- cCGuGCGCGCcgugagccuggUCGCCgGGGCccUGGGCCc -3' miRNA: 3'- uGC-UGUGCG-----------AGCGG-CUCGauACCCGG- -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 5143 | 0.67 | 0.761421 |
Target: 5'- cCGACGCcaUCGCCGAuGCg--GGGCg -3' miRNA: 3'- uGCUGUGcgAGCGGCU-CGauaCCCGg -5' |
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5571 | 5' | -58.1 | NC_001806.1 | + | 1634 | 0.67 | 0.752013 |
Target: 5'- aGCG-CGCGCaggCGgCGuGCgaGUGGGCCu -3' miRNA: 3'- -UGCuGUGCGa--GCgGCuCGa-UACCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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