Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 2374 | 0.68 | 0.476802 |
Target: 5'- cGUcCUCGGGGUCG-GGGAUCUGGCGc -3' miRNA: 3'- -CGaGAGCCCCGGCgUCCUGGGUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 2902 | 0.66 | 0.571921 |
Target: 5'- cGCUCUUcuucgucuucgGGGGUCGCGGGccgccGCCUccgGGCGg -3' miRNA: 3'- -CGAGAG-----------CCCCGGCGUCC-----UGGG---UCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3094 | 0.69 | 0.415092 |
Target: 5'- gGCgg-CGGcGGCCGCGGaGCUCGGCAGg -3' miRNA: 3'- -CGagaGCC-CCGGCGUCcUGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3137 | 0.74 | 0.212347 |
Target: 5'- aGCg--CGGGGCC-CAGGGcCCCGGCGAc -3' miRNA: 3'- -CGagaGCCCCGGcGUCCU-GGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3311 | 0.69 | 0.432229 |
Target: 5'- gGCgg-CGGGGaaGCGGGGCCC-GCGGg -3' miRNA: 3'- -CGagaGCCCCggCGUCCUGGGuCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 4177 | 0.66 | 0.552408 |
Target: 5'- cGCcC-CGGGGgCG-GGGGCCCGGCGc -3' miRNA: 3'- -CGaGaGCCCCgGCgUCCUGGGUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 4354 | 0.66 | 0.580757 |
Target: 5'- cGCUCgaugcggcccgCGGaGGCCGCGGGgguccucgccgccGCCCGGgGc -3' miRNA: 3'- -CGAGa----------GCC-CCGGCGUCC-------------UGGGUCgUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 5083 | 0.66 | 0.58174 |
Target: 5'- gGCUCggggugggCGGcGGCCcgucgGUGGGGCCCGGgGAg -3' miRNA: 3'- -CGAGa-------GCC-CCGG-----CGUCCUGGGUCgUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 11872 | 0.69 | 0.382101 |
Target: 5'- cGCUCgcCGGGGCCagacGCGGGGCCgaagacggaAGCAGu -3' miRNA: 3'- -CGAGa-GCCCCGG----CGUCCUGGg--------UCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 13005 | 0.68 | 0.467701 |
Target: 5'- uGCUCguguaUGGGGCCuuGGGcccgugccACCCGGCGAu -3' miRNA: 3'- -CGAGa----GCCCCGGcgUCC--------UGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 15853 | 0.7 | 0.358531 |
Target: 5'- cCUUUUGGGGCCGCggGGGGCCgAGa-- -3' miRNA: 3'- cGAGAGCCCCGGCG--UCCUGGgUCguu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 19099 | 0.67 | 0.523536 |
Target: 5'- --gCUUGGGGCCGacggggugGGGGCCCGGgGc -3' miRNA: 3'- cgaGAGCCCCGGCg-------UCCUGGGUCgUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 21891 | 0.67 | 0.5331 |
Target: 5'- cCUC-CGcGGGCCGCAucgagcgccgccGGGCCCGcGCGg -3' miRNA: 3'- cGAGaGC-CCCGGCGU------------CCUGGGU-CGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 22562 | 0.75 | 0.162552 |
Target: 5'- cGCUgaCgGGGGCCGCGGGGagcCCCGGCGc -3' miRNA: 3'- -CGAgaG-CCCCGGCGUCCU---GGGUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 22879 | 0.71 | 0.32872 |
Target: 5'- -gUCcCGGGGCUGgcCGGGGCCCGGCc- -3' miRNA: 3'- cgAGaGCCCCGGC--GUCCUGGGUCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 25943 | 0.67 | 0.514039 |
Target: 5'- gGCgugggggCGGGGCCGCGGGAgCgGGgGGa -3' miRNA: 3'- -CGaga----GCCCCGGCGUCCUgGgUCgUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 27273 | 0.7 | 0.366273 |
Target: 5'- gGCcaaUCGGcGGCCGCcagcgcggcGGGGCCCGGCc- -3' miRNA: 3'- -CGag-AGCC-CCGGCG---------UCCUGGGUCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 29105 | 0.68 | 0.45869 |
Target: 5'- gGCUgcUGGGGCCGCAGGGCgUGGa-- -3' miRNA: 3'- -CGAgaGCCCCGGCGUCCUGgGUCguu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 29138 | 0.7 | 0.37413 |
Target: 5'- cGgUCUCGGGGgggagccccccCCGCgAGGAagacCCCGGCAGu -3' miRNA: 3'- -CgAGAGCCCC-----------GGCG-UCCU----GGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 30791 | 0.66 | 0.601475 |
Target: 5'- cCUCgggCGGGGCCGUcGGuGCCCuGgGAg -3' miRNA: 3'- cGAGa--GCCCCGGCGuCC-UGGGuCgUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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