miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5572 3' -62.6 NC_001806.1 + 2374 0.68 0.476802
Target:  5'- cGUcCUCGGGGUCG-GGGAUCUGGCGc -3'
miRNA:   3'- -CGaGAGCCCCGGCgUCCUGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 2902 0.66 0.571921
Target:  5'- cGCUCUUcuucgucuucgGGGGUCGCGGGccgccGCCUccgGGCGg -3'
miRNA:   3'- -CGAGAG-----------CCCCGGCGUCC-----UGGG---UCGUu -5'
5572 3' -62.6 NC_001806.1 + 3094 0.69 0.415092
Target:  5'- gGCgg-CGGcGGCCGCGGaGCUCGGCAGg -3'
miRNA:   3'- -CGagaGCC-CCGGCGUCcUGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 3137 0.74 0.212347
Target:  5'- aGCg--CGGGGCC-CAGGGcCCCGGCGAc -3'
miRNA:   3'- -CGagaGCCCCGGcGUCCU-GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 3311 0.69 0.432229
Target:  5'- gGCgg-CGGGGaaGCGGGGCCC-GCGGg -3'
miRNA:   3'- -CGagaGCCCCggCGUCCUGGGuCGUU- -5'
5572 3' -62.6 NC_001806.1 + 4177 0.66 0.552408
Target:  5'- cGCcC-CGGGGgCG-GGGGCCCGGCGc -3'
miRNA:   3'- -CGaGaGCCCCgGCgUCCUGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 4354 0.66 0.580757
Target:  5'- cGCUCgaugcggcccgCGGaGGCCGCGGGgguccucgccgccGCCCGGgGc -3'
miRNA:   3'- -CGAGa----------GCC-CCGGCGUCC-------------UGGGUCgUu -5'
5572 3' -62.6 NC_001806.1 + 5083 0.66 0.58174
Target:  5'- gGCUCggggugggCGGcGGCCcgucgGUGGGGCCCGGgGAg -3'
miRNA:   3'- -CGAGa-------GCC-CCGG-----CGUCCUGGGUCgUU- -5'
5572 3' -62.6 NC_001806.1 + 11872 0.69 0.382101
Target:  5'- cGCUCgcCGGGGCCagacGCGGGGCCgaagacggaAGCAGu -3'
miRNA:   3'- -CGAGa-GCCCCGG----CGUCCUGGg--------UCGUU- -5'
5572 3' -62.6 NC_001806.1 + 13005 0.68 0.467701
Target:  5'- uGCUCguguaUGGGGCCuuGGGcccgugccACCCGGCGAu -3'
miRNA:   3'- -CGAGa----GCCCCGGcgUCC--------UGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 15853 0.7 0.358531
Target:  5'- cCUUUUGGGGCCGCggGGGGCCgAGa-- -3'
miRNA:   3'- cGAGAGCCCCGGCG--UCCUGGgUCguu -5'
5572 3' -62.6 NC_001806.1 + 19099 0.67 0.523536
Target:  5'- --gCUUGGGGCCGacggggugGGGGCCCGGgGc -3'
miRNA:   3'- cgaGAGCCCCGGCg-------UCCUGGGUCgUu -5'
5572 3' -62.6 NC_001806.1 + 21891 0.67 0.5331
Target:  5'- cCUC-CGcGGGCCGCAucgagcgccgccGGGCCCGcGCGg -3'
miRNA:   3'- cGAGaGC-CCCGGCGU------------CCUGGGU-CGUu -5'
5572 3' -62.6 NC_001806.1 + 22562 0.75 0.162552
Target:  5'- cGCUgaCgGGGGCCGCGGGGagcCCCGGCGc -3'
miRNA:   3'- -CGAgaG-CCCCGGCGUCCU---GGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 22879 0.71 0.32872
Target:  5'- -gUCcCGGGGCUGgcCGGGGCCCGGCc- -3'
miRNA:   3'- cgAGaGCCCCGGC--GUCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 25943 0.67 0.514039
Target:  5'- gGCgugggggCGGGGCCGCGGGAgCgGGgGGa -3'
miRNA:   3'- -CGaga----GCCCCGGCGUCCUgGgUCgUU- -5'
5572 3' -62.6 NC_001806.1 + 27273 0.7 0.366273
Target:  5'- gGCcaaUCGGcGGCCGCcagcgcggcGGGGCCCGGCc- -3'
miRNA:   3'- -CGag-AGCC-CCGGCG---------UCCUGGGUCGuu -5'
5572 3' -62.6 NC_001806.1 + 29105 0.68 0.45869
Target:  5'- gGCUgcUGGGGCCGCAGGGCgUGGa-- -3'
miRNA:   3'- -CGAgaGCCCCGGCGUCCUGgGUCguu -5'
5572 3' -62.6 NC_001806.1 + 29138 0.7 0.37413
Target:  5'- cGgUCUCGGGGgggagccccccCCGCgAGGAagacCCCGGCAGu -3'
miRNA:   3'- -CgAGAGCCCC-----------GGCG-UCCU----GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 30791 0.66 0.601475
Target:  5'- cCUCgggCGGGGCCGUcGGuGCCCuGgGAg -3'
miRNA:   3'- cGAGa--GCCCCGGCGuCC-UGGGuCgUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.