Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5572 | 3' | -62.6 | NC_001806.1 | + | 77967 | 0.67 | 0.5331 |
Target: 5'- gGCcC-CGGGGCCGCcgcucGGACCCcagAGCu- -3' miRNA: 3'- -CGaGaGCCCCGGCGu----CCUGGG---UCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 21891 | 0.67 | 0.5331 |
Target: 5'- cCUC-CGcGGGCCGCAucgagcgccgccGGGCCCGcGCGg -3' miRNA: 3'- cGAGaGC-CCCGGCGU------------CCUGGGU-CGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 19099 | 0.67 | 0.523536 |
Target: 5'- --gCUUGGGGCCGacggggugGGGGCCCGGgGc -3' miRNA: 3'- cgaGAGCCCCGGCg-------UCCUGGGUCgUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 43496 | 0.67 | 0.523536 |
Target: 5'- -aUCgaCGGGGCCGUGGcGGCCCAuCAGg -3' miRNA: 3'- cgAGa-GCCCCGGCGUC-CUGGGUcGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 126113 | 0.67 | 0.523536 |
Target: 5'- cGCUaCUgCGuGGGCCGCGcGGACgaCGGCGg -3' miRNA: 3'- -CGA-GA-GC-CCCGGCGU-CCUGg-GUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 104184 | 0.67 | 0.523536 |
Target: 5'- uGCagUCGGGGCgGCGcGGuCCCAGg-- -3' miRNA: 3'- -CGagAGCCCCGgCGU-CCuGGGUCguu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 134897 | 0.67 | 0.514039 |
Target: 5'- cGC-CUCGGccgccucgaccaGGCUGCGGucCCCGGCGAu -3' miRNA: 3'- -CGaGAGCC------------CCGGCGUCcuGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 25943 | 0.67 | 0.514039 |
Target: 5'- gGCgugggggCGGGGCCGCGGGAgCgGGgGGa -3' miRNA: 3'- -CGaga----GCCCCGGCGUCCUgGgUCgUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 136528 | 0.67 | 0.504613 |
Target: 5'- aGCUUgacGGGCCGCucGGGccGCCCGGCGc -3' miRNA: 3'- -CGAGagcCCCGGCG--UCC--UGGGUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 72414 | 0.67 | 0.500863 |
Target: 5'- gGCUCUgcaucuuuaCGGGGCCagcgagacuuaccuGCAGGACgaagcguUCAGCGAa -3' miRNA: 3'- -CGAGA---------GCCCCGG--------------CGUCCUG-------GGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 107038 | 0.68 | 0.48599 |
Target: 5'- cGCcCgCGGGGCCGCGGG-CUguGCc- -3' miRNA: 3'- -CGaGaGCCCCGGCGUCCuGGguCGuu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 138835 | 0.68 | 0.476802 |
Target: 5'- aGCaacUGGGGCCGCgggacgGGGGCCCGGaCGAu -3' miRNA: 3'- -CGagaGCCCCGGCG------UCCUGGGUC-GUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 2374 | 0.68 | 0.476802 |
Target: 5'- cGUcCUCGGGGUCG-GGGAUCUGGCGc -3' miRNA: 3'- -CGaGAGCCCCGGCgUCCUGGGUCGUu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 13005 | 0.68 | 0.467701 |
Target: 5'- uGCUCguguaUGGGGCCuuGGGcccgugccACCCGGCGAu -3' miRNA: 3'- -CGAGa----GCCCCGGcgUCC--------UGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 29105 | 0.68 | 0.45869 |
Target: 5'- gGCUgcUGGGGCCGCAGGGCgUGGa-- -3' miRNA: 3'- -CGAgaGCCCCGGCGUCCUGgGUCguu -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 35514 | 0.68 | 0.453328 |
Target: 5'- gGCgUCggagCGGGGCCGCucacgccaagccGCCCAGCGAg -3' miRNA: 3'- -CG-AGa---GCCCCGGCGucc---------UGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 54127 | 0.69 | 0.432229 |
Target: 5'- -gUCcCGGGGCC-CAGGGgCCGGUAGg -3' miRNA: 3'- cgAGaGCCCCGGcGUCCUgGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3311 | 0.69 | 0.432229 |
Target: 5'- gGCgg-CGGGGaaGCGGGGCCC-GCGGg -3' miRNA: 3'- -CGagaGCCCCggCGUCCUGGGuCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 3094 | 0.69 | 0.415092 |
Target: 5'- gGCgg-CGGcGGCCGCGGaGCUCGGCAGg -3' miRNA: 3'- -CGagaGCC-CCGGCGUCcUGGGUCGUU- -5' |
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5572 | 3' | -62.6 | NC_001806.1 | + | 88088 | 0.69 | 0.414246 |
Target: 5'- aGCUCguucaggugggauUCGGGGagguCGCAGGAaCCgAGCGAa -3' miRNA: 3'- -CGAG-------------AGCCCCg---GCGUCCU-GGgUCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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