miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5572 3' -62.6 NC_001806.1 + 3137 0.74 0.212347
Target:  5'- aGCg--CGGGGCC-CAGGGcCCCGGCGAc -3'
miRNA:   3'- -CGagaGCCCCGGcGUCCU-GGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 22562 0.75 0.162552
Target:  5'- cGCUgaCgGGGGCCGCGGGGagcCCCGGCGc -3'
miRNA:   3'- -CGAgaG-CCCCGGCGUCCU---GGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 69238 0.7 0.37413
Target:  5'- uGCagCUCGGGGagcagcccuCCGCcGGcGCCCAGCAGc -3'
miRNA:   3'- -CGa-GAGCCCC---------GGCGuCC-UGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 83821 0.69 0.382101
Target:  5'- ----gCGGGGUcggCGCGGGAUCCGGCAc -3'
miRNA:   3'- cgagaGCCCCG---GCGUCCUGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 107038 0.68 0.48599
Target:  5'- cGCcCgCGGGGCCGCGGG-CUguGCc- -3'
miRNA:   3'- -CGaGaGCCCCGGCGUCCuGGguCGuu -5'
5572 3' -62.6 NC_001806.1 + 138835 0.68 0.476802
Target:  5'- aGCaacUGGGGCCGCgggacgGGGGCCCGGaCGAu -3'
miRNA:   3'- -CGagaGCCCCGGCG------UCCUGGGUC-GUU- -5'
5572 3' -62.6 NC_001806.1 + 2374 0.68 0.476802
Target:  5'- cGUcCUCGGGGUCG-GGGAUCUGGCGc -3'
miRNA:   3'- -CGaGAGCCCCGGCgUCCUGGGUCGUu -5'
5572 3' -62.6 NC_001806.1 + 13005 0.68 0.467701
Target:  5'- uGCUCguguaUGGGGCCuuGGGcccgugccACCCGGCGAu -3'
miRNA:   3'- -CGAGa----GCCCCGGcgUCC--------UGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 29105 0.68 0.45869
Target:  5'- gGCUgcUGGGGCCGCAGGGCgUGGa-- -3'
miRNA:   3'- -CGAgaGCCCCGGCGUCCUGgGUCguu -5'
5572 3' -62.6 NC_001806.1 + 35514 0.68 0.453328
Target:  5'- gGCgUCggagCGGGGCCGCucacgccaagccGCCCAGCGAg -3'
miRNA:   3'- -CG-AGa---GCCCCGGCGucc---------UGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 54127 0.69 0.432229
Target:  5'- -gUCcCGGGGCC-CAGGGgCCGGUAGg -3'
miRNA:   3'- cgAGaGCCCCGGcGUCCUgGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 3311 0.69 0.432229
Target:  5'- gGCgg-CGGGGaaGCGGGGCCC-GCGGg -3'
miRNA:   3'- -CGagaGCCCCggCGUCCUGGGuCGUU- -5'
5572 3' -62.6 NC_001806.1 + 3094 0.69 0.415092
Target:  5'- gGCgg-CGGcGGCCGCGGaGCUCGGCAGg -3'
miRNA:   3'- -CGagaGCC-CCGGCGUCcUGGGUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 88088 0.69 0.414246
Target:  5'- aGCUCguucaggugggauUCGGGGagguCGCAGGAaCCgAGCGAa -3'
miRNA:   3'- -CGAG-------------AGCCCCg---GCGUCCU-GGgUCGUU- -5'
5572 3' -62.6 NC_001806.1 + 50399 0.69 0.40668
Target:  5'- gGCUCUCGGuGGUCGUGGGggcGCgCCuGCAc -3'
miRNA:   3'- -CGAGAGCC-CCGGCGUCC---UG-GGuCGUu -5'
5572 3' -62.6 NC_001806.1 + 11872 0.69 0.382101
Target:  5'- cGCUCgcCGGGGCCagacGCGGGGCCgaagacggaAGCAGu -3'
miRNA:   3'- -CGAGa-GCCCCGG----CGUCCUGGg--------UCGUU- -5'
5572 3' -62.6 NC_001806.1 + 126888 1.07 0.000848
Target:  5'- gGCUCUCGGGGCCGCAGGACCCAGCAAg -3'
miRNA:   3'- -CGAGAGCCCCGGCGUCCUGGGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.