Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5572 | 5' | -56.6 | NC_001806.1 | + | 148518 | 0.66 | 0.889429 |
Target: 5'- -cCUCCUcGGCCuccaugcgggucuggGGGUCGUUCaCGAUCg -3' miRNA: 3'- aaGAGGGcUUGG---------------UCCGGCAAG-GCUAG- -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 132994 | 0.66 | 0.879695 |
Target: 5'- -gCUCCCucaGAGCCcuGGGCCGgggCCG-UCu -3' miRNA: 3'- aaGAGGG---CUUGG--UCCGGCaa-GGCuAG- -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 131512 | 0.66 | 0.857393 |
Target: 5'- ---cCCCGGAcCCGGGCCGUUUCc--- -3' miRNA: 3'- aagaGGGCUU-GGUCCGGCAAGGcuag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 120110 | 0.67 | 0.841491 |
Target: 5'- ---cCCUGGGCCAGGCCa-UCCGGg- -3' miRNA: 3'- aagaGGGCUUGGUCCGGcaAGGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 118127 | 0.67 | 0.841491 |
Target: 5'- gUCUCCCuGGCCuGGCCc--CCGAUg -3' miRNA: 3'- aAGAGGGcUUGGuCCGGcaaGGCUAg -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 61975 | 0.67 | 0.833249 |
Target: 5'- gUUUUCCGuAACCAGGUCGUcggcggCCGAc- -3' miRNA: 3'- aAGAGGGC-UUGGUCCGGCAa-----GGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 64832 | 0.67 | 0.824823 |
Target: 5'- -gUUCCCaGACguGGCCGggggUCCGAa- -3' miRNA: 3'- aaGAGGGcUUGguCCGGCa---AGGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 32991 | 0.68 | 0.798522 |
Target: 5'- ---cCCCGGGCCGGGCCGccacgggggCCGGc- -3' miRNA: 3'- aagaGGGCUUGGUCCGGCaa-------GGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 41101 | 0.68 | 0.770859 |
Target: 5'- -gCUgCCGGaacccacggacGCCGGGCCGggCCGAc- -3' miRNA: 3'- aaGAgGGCU-----------UGGUCCGGCaaGGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 1542 | 0.68 | 0.761377 |
Target: 5'- -cCUCCgCGGcccgcgccACCGGGCCGggCCGGc- -3' miRNA: 3'- aaGAGG-GCU--------UGGUCCGGCaaGGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 20000 | 0.69 | 0.692299 |
Target: 5'- --aUCCCGAGCCGGGgCGUcgcgaugCCGAc- -3' miRNA: 3'- aagAGGGCUUGGUCCgGCAa------GGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 68471 | 0.71 | 0.620725 |
Target: 5'- cUCUcCCCGAggcccccgACCAGGCC-UUCCGGg- -3' miRNA: 3'- aAGA-GGGCU--------UGGUCCGGcAAGGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 73106 | 0.72 | 0.569686 |
Target: 5'- ---cCCCGAcccgGCCGGGCCG--CCGGUCg -3' miRNA: 3'- aagaGGGCU----UGGUCCGGCaaGGCUAG- -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 34410 | 0.72 | 0.569686 |
Target: 5'- ----gCCGGGCCGGGCCGggCCGGg- -3' miRNA: 3'- aagagGGCUUGGUCCGGCaaGGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 2937 | 0.72 | 0.529605 |
Target: 5'- -cCUCCgGGcgGCCGGGCCGggCCGGg- -3' miRNA: 3'- aaGAGGgCU--UGGUCCGGCaaGGCUag -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 4727 | 0.72 | 0.519741 |
Target: 5'- -cCUCCCGuucgcggccCCGGGCCGgggcCCGGUCg -3' miRNA: 3'- aaGAGGGCuu-------GGUCCGGCaa--GGCUAG- -5' |
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5572 | 5' | -56.6 | NC_001806.1 | + | 126922 | 1.08 | 0.002761 |
Target: 5'- aUUCUCCCGAACCAGGCCGUUCCGAUCg -3' miRNA: 3'- -AAGAGGGCUUGGUCCGGCAAGGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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