miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5572 5' -56.6 NC_001806.1 + 148518 0.66 0.889429
Target:  5'- -cCUCCUcGGCCuccaugcgggucuggGGGUCGUUCaCGAUCg -3'
miRNA:   3'- aaGAGGGcUUGG---------------UCCGGCAAG-GCUAG- -5'
5572 5' -56.6 NC_001806.1 + 132994 0.66 0.879695
Target:  5'- -gCUCCCucaGAGCCcuGGGCCGgggCCG-UCu -3'
miRNA:   3'- aaGAGGG---CUUGG--UCCGGCaa-GGCuAG- -5'
5572 5' -56.6 NC_001806.1 + 131512 0.66 0.857393
Target:  5'- ---cCCCGGAcCCGGGCCGUUUCc--- -3'
miRNA:   3'- aagaGGGCUU-GGUCCGGCAAGGcuag -5'
5572 5' -56.6 NC_001806.1 + 120110 0.67 0.841491
Target:  5'- ---cCCUGGGCCAGGCCa-UCCGGg- -3'
miRNA:   3'- aagaGGGCUUGGUCCGGcaAGGCUag -5'
5572 5' -56.6 NC_001806.1 + 118127 0.67 0.841491
Target:  5'- gUCUCCCuGGCCuGGCCc--CCGAUg -3'
miRNA:   3'- aAGAGGGcUUGGuCCGGcaaGGCUAg -5'
5572 5' -56.6 NC_001806.1 + 61975 0.67 0.833249
Target:  5'- gUUUUCCGuAACCAGGUCGUcggcggCCGAc- -3'
miRNA:   3'- aAGAGGGC-UUGGUCCGGCAa-----GGCUag -5'
5572 5' -56.6 NC_001806.1 + 64832 0.67 0.824823
Target:  5'- -gUUCCCaGACguGGCCGggggUCCGAa- -3'
miRNA:   3'- aaGAGGGcUUGguCCGGCa---AGGCUag -5'
5572 5' -56.6 NC_001806.1 + 32991 0.68 0.798522
Target:  5'- ---cCCCGGGCCGGGCCGccacgggggCCGGc- -3'
miRNA:   3'- aagaGGGCUUGGUCCGGCaa-------GGCUag -5'
5572 5' -56.6 NC_001806.1 + 41101 0.68 0.770859
Target:  5'- -gCUgCCGGaacccacggacGCCGGGCCGggCCGAc- -3'
miRNA:   3'- aaGAgGGCU-----------UGGUCCGGCaaGGCUag -5'
5572 5' -56.6 NC_001806.1 + 1542 0.68 0.761377
Target:  5'- -cCUCCgCGGcccgcgccACCGGGCCGggCCGGc- -3'
miRNA:   3'- aaGAGG-GCU--------UGGUCCGGCaaGGCUag -5'
5572 5' -56.6 NC_001806.1 + 20000 0.69 0.692299
Target:  5'- --aUCCCGAGCCGGGgCGUcgcgaugCCGAc- -3'
miRNA:   3'- aagAGGGCUUGGUCCgGCAa------GGCUag -5'
5572 5' -56.6 NC_001806.1 + 68471 0.71 0.620725
Target:  5'- cUCUcCCCGAggcccccgACCAGGCC-UUCCGGg- -3'
miRNA:   3'- aAGA-GGGCU--------UGGUCCGGcAAGGCUag -5'
5572 5' -56.6 NC_001806.1 + 73106 0.72 0.569686
Target:  5'- ---cCCCGAcccgGCCGGGCCG--CCGGUCg -3'
miRNA:   3'- aagaGGGCU----UGGUCCGGCaaGGCUAG- -5'
5572 5' -56.6 NC_001806.1 + 34410 0.72 0.569686
Target:  5'- ----gCCGGGCCGGGCCGggCCGGg- -3'
miRNA:   3'- aagagGGCUUGGUCCGGCaaGGCUag -5'
5572 5' -56.6 NC_001806.1 + 2937 0.72 0.529605
Target:  5'- -cCUCCgGGcgGCCGGGCCGggCCGGg- -3'
miRNA:   3'- aaGAGGgCU--UGGUCCGGCaaGGCUag -5'
5572 5' -56.6 NC_001806.1 + 4727 0.72 0.519741
Target:  5'- -cCUCCCGuucgcggccCCGGGCCGgggcCCGGUCg -3'
miRNA:   3'- aaGAGGGCuu-------GGUCCGGCaa--GGCUAG- -5'
5572 5' -56.6 NC_001806.1 + 126922 1.08 0.002761
Target:  5'- aUUCUCCCGAACCAGGCCGUUCCGAUCg -3'
miRNA:   3'- -AAGAGGGCUUGGUCCGGCAAGGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.