Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5573 | 3' | -56 | NC_001806.1 | + | 123165 | 0.68 | 0.824823 |
Target: 5'- cGGGC-CUUGggCACGCGAGACUaucAGaGCa -3' miRNA: 3'- cUCCGaGAGCa-GUGCGUUCUGG---UC-CG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 140866 | 0.68 | 0.824823 |
Target: 5'- aGGGuaUCaaaCGUCACGUAGGGCCcgucgguacaGGGCg -3' miRNA: 3'- -CUCcgAGa--GCAGUGCGUUCUGG----------UCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 24601 | 0.68 | 0.822261 |
Target: 5'- gGAGGCccaCUCG-CACGCcgccugcgcgcgcuGGGGCCuGGGCg -3' miRNA: 3'- -CUCCGa--GAGCaGUGCG--------------UUCUGG-UCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 89496 | 0.68 | 0.816222 |
Target: 5'- aGGGCcuugUUUGUCugGCG-GAuCCGGGCg -3' miRNA: 3'- cUCCGa---GAGCAGugCGUuCU-GGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 110971 | 0.68 | 0.798522 |
Target: 5'- -cGGCUaCUaCGUUACGUGggcGGugCGGGCg -3' miRNA: 3'- cuCCGA-GA-GCAGUGCGU---UCugGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 128266 | 0.68 | 0.78944 |
Target: 5'- aAGGCgUUUGUCagcacgGCGCGAG-CCGGGCc -3' miRNA: 3'- cUCCGaGAGCAG------UGCGUUCuGGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 125902 | 0.69 | 0.761377 |
Target: 5'- cGAGGCg---GcCACGCAAaACCAGGCc -3' miRNA: 3'- -CUCCGagagCaGUGCGUUcUGGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 116909 | 0.69 | 0.751781 |
Target: 5'- cGAGGCgCUCGUCGCcugGCu-GACCcacgcGGGCc -3' miRNA: 3'- -CUCCGaGAGCAGUG---CGuuCUGG-----UCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 3163 | 0.69 | 0.742077 |
Target: 5'- cAGGCUCaCGgCGCGCAcggcGGCCAcGGCg -3' miRNA: 3'- cUCCGAGaGCaGUGCGUu---CUGGU-CCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 24096 | 0.7 | 0.732278 |
Target: 5'- aGGGCgugCUgcugcUGUcCACGCGGGACCuGGCc -3' miRNA: 3'- cUCCGa--GA-----GCA-GUGCGUUCUGGuCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 39187 | 0.7 | 0.722391 |
Target: 5'- cGGGGCggcggcCUUGUCuGCGUucuugGGGGCCGGGCc -3' miRNA: 3'- -CUCCGa-----GAGCAG-UGCG-----UUCUGGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 3064 | 0.7 | 0.712426 |
Target: 5'- cAGGCUCUgguUGUCAaacaGCAGGuCCGcGGCg -3' miRNA: 3'- cUCCGAGA---GCAGUg---CGUUCuGGU-CCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 22305 | 0.7 | 0.702392 |
Target: 5'- cGGGGa---CGUgGCGCuGGACCAGGCc -3' miRNA: 3'- -CUCCgagaGCAgUGCGuUCUGGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 90324 | 0.71 | 0.67197 |
Target: 5'- uGGGUUCUCG-CACGaCGGGGCuCGGGg -3' miRNA: 3'- cUCCGAGAGCaGUGC-GUUCUG-GUCCg -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 92897 | 0.71 | 0.661753 |
Target: 5'- cAGGCUgCggccgCGUggucCGCGCAGGGCgGGGCg -3' miRNA: 3'- cUCCGA-Ga----GCA----GUGCGUUCUGgUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 1497 | 0.71 | 0.651511 |
Target: 5'- gGGGGCgUCgUCGUCGggcuccaGCAGGGCgCGGGCg -3' miRNA: 3'- -CUCCG-AG-AGCAGUg------CGUUCUG-GUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 76565 | 0.71 | 0.641254 |
Target: 5'- gGAGGUgCUgGccgCGCGCGAGcGCCGGGCc -3' miRNA: 3'- -CUCCGaGAgCa--GUGCGUUC-UGGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 74740 | 0.73 | 0.509949 |
Target: 5'- gGAGGCaaugCUCGagggaGCGCGGGAgCGGGCg -3' miRNA: 3'- -CUCCGa---GAGCag---UGCGUUCUgGUCCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 147712 | 0.78 | 0.298851 |
Target: 5'- gGAGGCggcgCUCG-CACGCAcgGGGCCAcGGCc -3' miRNA: 3'- -CUCCGa---GAGCaGUGCGU--UCUGGU-CCG- -5' |
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5573 | 3' | -56 | NC_001806.1 | + | 126885 | 0.82 | 0.161991 |
Target: 5'- cGGGGCUCUCGgggC-CGCAGGACCcagcaAGGCg -3' miRNA: 3'- -CUCCGAGAGCa--GuGCGUUCUGG-----UCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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