miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5573 5' -55.5 NC_001806.1 + 47032 0.66 0.913131
Target:  5'- gGGGuuuucucuuCCCGCGCCgUCGGGCGucccacacucucuGGGc -3'
miRNA:   3'- -UCC---------GGGUGCGG-AGCCCGCuuuuu--------UCC- -5'
5573 5' -55.5 NC_001806.1 + 21266 0.66 0.91135
Target:  5'- --cCCCACGaCCUCGacgacgcccGGCGGGAcgGGAGGg -3'
miRNA:   3'- uccGGGUGC-GGAGC---------CCGCUUU--UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 71525 0.66 0.91135
Target:  5'- uGGUgUGCGgg-CGGGCGggGGGGGGg -3'
miRNA:   3'- uCCGgGUGCggaGCCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 63911 0.66 0.91135
Target:  5'- -aGCCCgAUGCCcccguugCGGGCGAGGAu-GGc -3'
miRNA:   3'- ucCGGG-UGCGGa------GCCCGCUUUUuuCC- -5'
5573 5' -55.5 NC_001806.1 + 73857 0.66 0.91135
Target:  5'- uGGCCaaauuUGCC-CGuGGCGAAGAGauuAGGg -3'
miRNA:   3'- uCCGGgu---GCGGaGC-CCGCUUUUU---UCC- -5'
5573 5' -55.5 NC_001806.1 + 31186 0.66 0.91135
Target:  5'- cGGCCCcCGCgUCGGaGUGGAAc---- -3'
miRNA:   3'- uCCGGGuGCGgAGCC-CGCUUUuuucc -5'
5573 5' -55.5 NC_001806.1 + 15072 0.66 0.91135
Target:  5'- cGGGCgaCugGUCUCGgGGCGcGcgGGGGa -3'
miRNA:   3'- -UCCGg-GugCGGAGC-CCGCuUuuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 10016 0.66 0.91135
Target:  5'- cGGGCuCCAUgugaGCCUCGGccgaacagcGCGguGGGGGGu -3'
miRNA:   3'- -UCCG-GGUG----CGGAGCC---------CGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 57129 0.67 0.905259
Target:  5'- cAGGCguauauCCGCGCggUGGGCcgcgcGAGGGGAGGg -3'
miRNA:   3'- -UCCG------GGUGCGgaGCCCG-----CUUUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 3325 0.67 0.905259
Target:  5'- gGGGCCCGCGggucCCUCcGGCcGcgGGGGGc -3'
miRNA:   3'- -UCCGGGUGC----GGAGcCCGcUuuUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 26986 0.67 0.905259
Target:  5'- uGGGCCCGCGag-CGGGcCGAcc--GGGc -3'
miRNA:   3'- -UCCGGGUGCggaGCCC-GCUuuuuUCC- -5'
5573 5' -55.5 NC_001806.1 + 55873 0.67 0.905259
Target:  5'- aAGGCCCAccCGCCcCGGGCc-------- -3'
miRNA:   3'- -UCCGGGU--GCGGaGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 51931 0.67 0.903386
Target:  5'- uGGCCUACGUCUCcgugcuguaccgguGGGCGuccu--GGa -3'
miRNA:   3'- uCCGGGUGCGGAG--------------CCCGCuuuuuuCC- -5'
5573 5' -55.5 NC_001806.1 + 89184 0.67 0.903386
Target:  5'- uGGCCCggucggcuucuguuGCGUcccgaCUgGGGCGAGGuAGGGg -3'
miRNA:   3'- uCCGGG--------------UGCG-----GAgCCCGCUUUuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 151433 0.67 0.898934
Target:  5'- gGGGCCCAcCGgCgggGGGCGGcgGcGGGg -3'
miRNA:   3'- -UCCGGGU-GCgGag-CCCGCUuuUuUCC- -5'
5573 5' -55.5 NC_001806.1 + 2827 0.67 0.897642
Target:  5'- cGGGCCCcggggGCGUggaggggggcgCGGGCGcgGGGAGGg -3'
miRNA:   3'- -UCCGGG-----UGCGga---------GCCCGCuuUUUUCC- -5'
5573 5' -55.5 NC_001806.1 + 24330 0.67 0.892379
Target:  5'- cGGUgCugGCCUCGGGCc-------- -3'
miRNA:   3'- uCCGgGugCGGAGCCCGcuuuuuucc -5'
5573 5' -55.5 NC_001806.1 + 34843 0.67 0.884904
Target:  5'- cGGCagCCACGCCcccagcgUCGGGUGucacGGGGa -3'
miRNA:   3'- uCCG--GGUGCGG-------AGCCCGCuuuuUUCC- -5'
5573 5' -55.5 NC_001806.1 + 30763 0.67 0.881416
Target:  5'- gGGGCCgCGuccuccuccgcuucCGCCuccUCGGGCGggGccgucggugcccugGGAGGg -3'
miRNA:   3'- -UCCGG-GU--------------GCGG---AGCCCGCuuU--------------UUUCC- -5'
5573 5' -55.5 NC_001806.1 + 51105 0.67 0.878587
Target:  5'- gGGGCCgC-CGCCcugCGGGCGcacgugucGGGGAGGc -3'
miRNA:   3'- -UCCGG-GuGCGGa--GCCCGCu-------UUUUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.