miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 3' -61.5 NC_001806.1 + 144831 0.66 0.651064
Target:  5'- gACCgcggcGGUCCgGG-CCCCGuccGGACCCg -3'
miRNA:   3'- aUGGa----CCGGGgUCaGGGGU---UCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 126410 0.66 0.651064
Target:  5'- gACUugaUGGCacaCCGGUCCCCgGAGGCguUCCg -3'
miRNA:   3'- aUGG---ACCGg--GGUCAGGGG-UUCUG--GGG- -5'
5574 3' -61.5 NC_001806.1 + 30638 0.66 0.651064
Target:  5'- gGCCgggggGGCgcggCCAGggugggCCCGGGACCCCc -3'
miRNA:   3'- aUGGa----CCGg---GGUCag----GGGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 23667 0.66 0.651064
Target:  5'- -cCCUGGCgaCCGGcCCUCAuguuuGACCCg -3'
miRNA:   3'- auGGACCGg-GGUCaGGGGUu----CUGGGg -5'
5574 3' -61.5 NC_001806.1 + 96545 0.66 0.641145
Target:  5'- -cCCUGGCgCCC---CCCCAacgggGGACCCg -3'
miRNA:   3'- auGGACCG-GGGucaGGGGU-----UCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 107628 0.66 0.641145
Target:  5'- -uCCUGGCCCagcagaCCCAcGGCCUCg -3'
miRNA:   3'- auGGACCGGGgucag-GGGUuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 80511 0.66 0.641145
Target:  5'- aGCCccaaCCCCAG-CCCCA--ACCCCa -3'
miRNA:   3'- aUGGacc-GGGGUCaGGGGUucUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 94011 0.66 0.641145
Target:  5'- gGCC--GCCCCGGUgUCCGAG-CCCa -3'
miRNA:   3'- aUGGacCGGGGUCAgGGGUUCuGGGg -5'
5574 3' -61.5 NC_001806.1 + 80535 0.66 0.641145
Target:  5'- aGCCccaaCCCCAG-CCCCA--ACCCCa -3'
miRNA:   3'- aUGGacc-GGGGUCaGGGGUucUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 23522 0.66 0.63519
Target:  5'- cGCCgagGGCCCCGaccCCCUggGcggcuggcggcggcaGCCCCc -3'
miRNA:   3'- aUGGa--CCGGGGUca-GGGGuuC---------------UGGGG- -5'
5574 3' -61.5 NC_001806.1 + 22159 0.66 0.63122
Target:  5'- cGCCgguucgaGGCCUCGGgcgCCCCGgcggccguguGGGCgCCCg -3'
miRNA:   3'- aUGGa------CCGGGGUCa--GGGGU----------UCUG-GGG- -5'
5574 3' -61.5 NC_001806.1 + 127035 0.66 0.63122
Target:  5'- cGCCgagcuaugGGCCUCucguUCUCCGGGGCCCg -3'
miRNA:   3'- aUGGa-------CCGGGGuc--AGGGGUUCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 30721 0.66 0.63122
Target:  5'- -uCCUcGGCCCCGacCCCCGcggGGGCCgCCu -3'
miRNA:   3'- auGGA-CCGGGGUcaGGGGU---UCUGG-GG- -5'
5574 3' -61.5 NC_001806.1 + 2777 0.66 0.63122
Target:  5'- gGCCUGcGCCgCGGcggCCCGGGGCgCCg -3'
miRNA:   3'- aUGGAC-CGGgGUCag-GGGUUCUGgGG- -5'
5574 3' -61.5 NC_001806.1 + 4110 0.66 0.63122
Target:  5'- cGCCUccuccGCCUCGGgcgCCCCccaGAGGCCCg -3'
miRNA:   3'- aUGGAc----CGGGGUCa--GGGG---UUCUGGGg -5'
5574 3' -61.5 NC_001806.1 + 67176 0.66 0.63122
Target:  5'- cAgCUGGCCCCAGgCCUC---GCCCa -3'
miRNA:   3'- aUgGACCGGGGUCaGGGGuucUGGGg -5'
5574 3' -61.5 NC_001806.1 + 107587 0.66 0.630227
Target:  5'- cGCgCUGGCUCaAG-CCacccgauCCGAGACCCCg -3'
miRNA:   3'- aUG-GACCGGGgUCaGG-------GGUUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 120799 0.66 0.622287
Target:  5'- cGCCguUGGCCCCcgccucuggGGUuugcccuccccccgcCCCCGgcauggcgcagcugGGACCCCg -3'
miRNA:   3'- aUGG--ACCGGGG---------UCA---------------GGGGU--------------UCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 7250 0.66 0.621295
Target:  5'- cGCCaacaauCCCCAGgacaccgcguguUCCCCGGGAgCCCCg -3'
miRNA:   3'- aUGGacc---GGGGUC------------AGGGGUUCU-GGGG- -5'
5574 3' -61.5 NC_001806.1 + 107688 0.66 0.621295
Target:  5'- -cCCUGauccgcGCCUUcGUCCCUGAGGCCUCa -3'
miRNA:   3'- auGGAC------CGGGGuCAGGGGUUCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.