miRNA display CGI


Results 21 - 40 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 3' -64.2 NC_001806.1 + 30454 0.66 0.595796
Target:  5'- cGCGGCGccGCCcccuccGGCGCCGcCcCGCu- -3'
miRNA:   3'- -CGCCGCucCGG------CCGCGGCuGuGCGcc -5'
5575 3' -64.2 NC_001806.1 + 29609 0.66 0.595796
Target:  5'- aCGGUGAGGCgGGgGgCGGCAa--GGa -3'
miRNA:   3'- cGCCGCUCCGgCCgCgGCUGUgcgCC- -5'
5575 3' -64.2 NC_001806.1 + 147371 0.66 0.595796
Target:  5'- uUGGCcccuGCCGGCGCgaggggggGACGCGUGGa -3'
miRNA:   3'- cGCCGcuc-CGGCCGCGg-------CUGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 26831 0.66 0.595796
Target:  5'- gGCGGgGAGGg-GGCGCCGGagcccccCGCGa -3'
miRNA:   3'- -CGCCgCUCCggCCGCGGCUgu-----GCGCc -5'
5575 3' -64.2 NC_001806.1 + 123215 0.66 0.595796
Target:  5'- gGUGGCGGaauGGaCCGaGaUGCCGccCACGCGGc -3'
miRNA:   3'- -CGCCGCU---CC-GGC-C-GCGGCu-GUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 2037 0.66 0.595796
Target:  5'- uCGGCG-GGCCaGuCGCaGGCGCGCa- -3'
miRNA:   3'- cGCCGCuCCGGcC-GCGgCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 22978 0.66 0.590108
Target:  5'- uGCGcGCGuGGCUGcgcgagcugcgguucGUGCgCGACGCGCuGGu -3'
miRNA:   3'- -CGC-CGCuCCGGC---------------CGCG-GCUGUGCG-CC- -5'
5575 3' -64.2 NC_001806.1 + 2462 0.66 0.590108
Target:  5'- gGCGGCcccgugGGGGUgGGgguuaucgucgucguCGCCGccgccGCACGCGGc -3'
miRNA:   3'- -CGCCG------CUCCGgCC---------------GCGGC-----UGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 101941 0.66 0.587267
Target:  5'- gGCGGCcAGGCCGGgaaacagcugggucaGCuCGAC-CGcCGGg -3'
miRNA:   3'- -CGCCGcUCCGGCCg--------------CG-GCUGuGC-GCC- -5'
5575 3' -64.2 NC_001806.1 + 68304 0.66 0.586321
Target:  5'- gGCGGCGuuucuguugucGGGaaCGGCcaucGCCccggcaGACGCGCGGg -3'
miRNA:   3'- -CGCCGC-----------UCCg-GCCG----CGG------CUGUGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 52710 0.66 0.586321
Target:  5'- -aGGUuccgGAGGCgCcGCGCgGACGgCGCGGg -3'
miRNA:   3'- cgCCG----CUCCG-GcCGCGgCUGU-GCGCC- -5'
5575 3' -64.2 NC_001806.1 + 9205 0.66 0.586321
Target:  5'- uGUGGCGAgGGCgCGGuCGaCGugGCGaGGg -3'
miRNA:   3'- -CGCCGCU-CCG-GCC-GCgGCugUGCgCC- -5'
5575 3' -64.2 NC_001806.1 + 40598 0.66 0.586321
Target:  5'- cGCGGCGAcaaacGCCGGaaCGUCuuuGCAgGCGGg -3'
miRNA:   3'- -CGCCGCUc----CGGCC--GCGGc--UGUgCGCC- -5'
5575 3' -64.2 NC_001806.1 + 38810 0.66 0.586321
Target:  5'- cGCGGgGAcccgGGCgGGgGUgGAUACGCuGGc -3'
miRNA:   3'- -CGCCgCU----CCGgCCgCGgCUGUGCG-CC- -5'
5575 3' -64.2 NC_001806.1 + 132777 0.66 0.586321
Target:  5'- cGCGGUGcGGgaGGCGgUGGCGCgGUGGc -3'
miRNA:   3'- -CGCCGCuCCggCCGCgGCUGUG-CGCC- -5'
5575 3' -64.2 NC_001806.1 + 1704 0.66 0.580649
Target:  5'- gGUGGUccccGAGGCCGccgcccggccguccaGCGCCGGCAgCaCGGc -3'
miRNA:   3'- -CGCCG----CUCCGGC---------------CGCGGCUGU-GcGCC- -5'
5575 3' -64.2 NC_001806.1 + 136365 0.66 0.580649
Target:  5'- ---cCGGGGCCGGCGCgcuccgcggccuccgCGAC-CGUGGc -3'
miRNA:   3'- cgccGCUCCGGCCGCG---------------GCUGuGCGCC- -5'
5575 3' -64.2 NC_001806.1 + 21195 0.66 0.576874
Target:  5'- aGCGG-GGGGCCcucggguggGGCGCgGAgACGgaGGa -3'
miRNA:   3'- -CGCCgCUCCGG---------CCGCGgCUgUGCg-CC- -5'
5575 3' -64.2 NC_001806.1 + 133431 0.66 0.576874
Target:  5'- gGCGGCaGGGGUCGuaCG-CGACACGCu- -3'
miRNA:   3'- -CGCCG-CUCCGGCc-GCgGCUGUGCGcc -5'
5575 3' -64.2 NC_001806.1 + 50726 0.66 0.576874
Target:  5'- aGCGGCu--GCUGGgcuuUGCCGACACcGUGGu -3'
miRNA:   3'- -CGCCGcucCGGCC----GCGGCUGUG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.