miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5575 5' -58.7 NC_001806.1 + 150986 0.68 0.658195
Target:  5'- -cCCACGAGCCgCGGCGcGCCaggcgggCGgCCGAg -3'
miRNA:   3'- aaGGUGCUUGG-GUCGC-UGGa------GC-GGCU- -5'
5575 5' -58.7 NC_001806.1 + 26882 0.68 0.658195
Target:  5'- -cCCGCGAcCCCcGCGACCccCGCgCGGg -3'
miRNA:   3'- aaGGUGCUuGGGuCGCUGGa-GCG-GCU- -5'
5575 5' -58.7 NC_001806.1 + 43115 0.68 0.658195
Target:  5'- cUCCACGGgaguCCCGGCcGCC-CGCCu- -3'
miRNA:   3'- aAGGUGCUu---GGGUCGcUGGaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 78908 0.68 0.658195
Target:  5'- gUCCGCGcucaucGCCgAGCGGCCccUCGCCc- -3'
miRNA:   3'- aAGGUGCu-----UGGgUCGCUGG--AGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 147655 0.68 0.668244
Target:  5'- gUCCGCGGGgCgGGCGGCCggcucCGCCc- -3'
miRNA:   3'- aAGGUGCUUgGgUCGCUGGa----GCGGcu -5'
5575 5' -58.7 NC_001806.1 + 120881 0.68 0.668244
Target:  5'- -gCCugGuccCCCGGgGACCUUGCCc- -3'
miRNA:   3'- aaGGugCuu-GGGUCgCUGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 73208 0.68 0.668244
Target:  5'- -gCC-CGAGCCCccgGGCgcaGACCUCGCCc- -3'
miRNA:   3'- aaGGuGCUUGGG---UCG---CUGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 75296 0.68 0.688248
Target:  5'- -cCCugGccuuCCUAGCGGCCaUgGCCGAc -3'
miRNA:   3'- aaGGugCuu--GGGUCGCUGG-AgCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 77388 0.68 0.688248
Target:  5'- --gCGCGGGCgCGGCGGCCgCGCCc- -3'
miRNA:   3'- aagGUGCUUGgGUCGCUGGaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 32663 0.68 0.697194
Target:  5'- --aCACGAGCCCacccgcgAGUGGCgUgGCCGAc -3'
miRNA:   3'- aagGUGCUUGGG-------UCGCUGgAgCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 20269 0.68 0.702147
Target:  5'- cUUCGCGuucucacuucuuuuACCCGGCGGCCcCGCCc- -3'
miRNA:   3'- aAGGUGCu-------------UGGGUCGCUGGaGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 3950 0.67 0.70807
Target:  5'- -gCCACGucCCCGGgGACCaCGCgCGGg -3'
miRNA:   3'- aaGGUGCuuGGGUCgCUGGaGCG-GCU- -5'
5575 5' -58.7 NC_001806.1 + 2528 0.67 0.70807
Target:  5'- ---gGCGGGCCCGGCGcACCgcgCGgCGAu -3'
miRNA:   3'- aaggUGCUUGGGUCGC-UGGa--GCgGCU- -5'
5575 5' -58.7 NC_001806.1 + 100765 0.67 0.727643
Target:  5'- --gCGCGAgcucgGCCuCGGCGGCCagUCGCCGc -3'
miRNA:   3'- aagGUGCU-----UGG-GUCGCUGG--AGCGGCu -5'
5575 5' -58.7 NC_001806.1 + 73698 0.67 0.731521
Target:  5'- -cUCGCGGACCUGgagcugcagcuucgcGCGGCCcCGCCGGc -3'
miRNA:   3'- aaGGUGCUUGGGU---------------CGCUGGaGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 24789 0.67 0.737313
Target:  5'- -aCgACGAcgGCCCGGgGGCCcugcCGCCGGc -3'
miRNA:   3'- aaGgUGCU--UGGGUCgCUGGa---GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 55178 0.67 0.737313
Target:  5'- -cCCugGGuCgCgGGCGucACCUCGCCGAu -3'
miRNA:   3'- aaGGugCUuG-GgUCGC--UGGAGCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 49135 0.67 0.737313
Target:  5'- aUCCACccGCCCccGCG-CCUCGCCc- -3'
miRNA:   3'- aAGGUGcuUGGGu-CGCuGGAGCGGcu -5'
5575 5' -58.7 NC_001806.1 + 6708 0.67 0.741157
Target:  5'- cUUCCugGAcaccaugcggguuggGCCCAG-GACgUaCGCCGAc -3'
miRNA:   3'- -AAGGugCU---------------UGGGUCgCUGgA-GCGGCU- -5'
5575 5' -58.7 NC_001806.1 + 125844 0.67 0.746895
Target:  5'- -gCCGCGGGCCCccGGCcGCCgcggaCGCCGu -3'
miRNA:   3'- aaGGUGCUUGGG--UCGcUGGa----GCGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.